G1962859


Basic Information

Item Value
gene id G1962859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22221994 ~ 22222290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2244371
GTCTGCACTCCTCTGCTGTCTGTAAGAAATTGTCCTCTCTGTACTGCGTAATCTTCACTCGCCCCTGCTCTCCTGTCCTGTGGACTGTGTCCAGCGGAGTTACTCAGGGTTCTCCTCCGACTCAATGCTGTCTCCTTTCCTTTTCTGCTGCTTTGTTGTAAGGTCAGCTGCTTTGTTAGATGCTGAAGAGTGTGTGCATGTCAACCCTTGTGcatttttagatgtgtgtgtgtgtgagctgctcCCAGCTCTGACAGTGTGTCTGCCTGCTGTGTAGATAAAGTCCTACTCTCGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2244371 True 297 lncRNA 0.51 1 22221994 22222290

Neighbor

gene id symbol gene type direction distance location
kif15 kif15 coding upstream 15285 22186199 ~ 22206709 (+)
LOC110505613 LOC106610987 coding upstream 50094 22117768 ~ 22171900 (+)
zfyve28 LOC106610988 coding upstream 104864 22053375 ~ 22117130 (+)
LOC110505607 LOC106610991 coding upstream 205984 21999690 ~ 22016010 (+)
chmp3 LOC106610994 coding upstream 224412 21990811 ~ 21997582 (+)
LOC110504207 LOC106610980 coding downstream 824 22223114 ~ 22249992 (+)
lrrc9 LOC106610979 coding downstream 74722 22297012 ~ 22318009 (+)
LOC110504208 LOC106598670 coding downstream 133684 22355974 ~ 22365214 (+)
ppm1aa LOC106610975 coding downstream 150667 22372957 ~ 22386710 (+)
six6a six6 coding downstream 243391 22465681 ~ 22473989 (+)
G1962858 LOC106610983 non-coding upstream 523 22220936 ~ 22221471 (+)
G1962840 NA non-coding upstream 40569 22179396 ~ 22181425 (+)
G1962838 LOC106610986 non-coding upstream 43257 22176207 ~ 22178737 (+)
G1962816 NA non-coding upstream 94258 22127536 ~ 22127736 (+)
G1962815 NA non-coding upstream 95906 22125720 ~ 22126088 (+)
G1962880 rtn1 non-coding downstream 27768 22250058 ~ 22274663 (+)
G1962919 NA non-coding downstream 98151 22320441 ~ 22320899 (+)
G1962920 NA non-coding downstream 98662 22320952 ~ 22321322 (+)
G1962923 NA non-coding downstream 100664 22322954 ~ 22323185 (+)
LOC110505603 LOC106610998 other upstream 353961 21838453 ~ 21886964 (+)
G1962316 NA other upstream 377984 21792183 ~ 21844010 (+)
G1961492 NA other upstream 1153325 21067964 ~ 21068669 (+)
G1961468 NA other upstream 1182194 21039205 ~ 21039800 (+)
G1960977 NA other upstream 1399356 20822317 ~ 20822638 (+)
G1962949 NA other downstream 170301 22392591 ~ 22392956 (+)
G1963734 NA other downstream 695656 22917946 ~ 22918686 (+)
G1964177 NA other downstream 1383644 23605934 ~ 23613765 (+)

Expression


Co-expression Network