G1962880 (rtn1)


Basic Information

Item Value
gene id G1962880
gene name rtn1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22250058 ~ 22274663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2244398
TAACATTATACATCAAGGAACATTTATTTGTCTTATCCTGTAATTAAATACATACTGTAAGTGCAAATAGTTAGACCAGGGTCTAAGAACTACATTGAGTATAGGTGAACATTGTACAAAGTTGGACAGTTAATTCAAACAAGCTAAATATCATCAGATAATCATTGTCTTCATAGTAGTTGAACAACAGTACCTAAAACATGATATTGTGTGTAGTTACATAGTTATGCAAAAAACTACAATTACATAAAATGATTTTGTGCTTGAAAACACAAAGGaaatcattttgaaatgtgtatatatatatattgactatatataCTGAGAGAAGCCCCACCAGCTAACTCAGAAACATGAAGCAGTATTTAACATTGGCAGCAGAGCATTTCTGTAGGCATATCGCTTTTTTGTGCCAAACCTTAGTTTGTTGTAAGCACTGAAGGAAAATAAAAAACTAGTGTGAAAACTGCACGAAAGATACAAAATAATATTTACTCAAGGCTTGACTTCATGCGCTTAATAACAAGcaacacaaaataaaaaatacattttcttccaAATTGTGTACTTGTCTACCTAGACTTATCTTGAACATGGGtgatttactgtgtgtgttaacCATTCTAGACAGTTTTGGGGTCAAGGCTTCTCCAGTGGTTGGTTTTAGAGAACACCTTCTAGATGACATAGTACTACCCCCAGATAATGACAAGGCTATCCAACAATGATCAAGCTGTCTGCCACTGAGTCTGAGCTGGGCTCCACTGTTAGCAAGGCGCAGGTCTACTCTTCCTTTCGCTTGGCCCCGGGGATCTTCGCCTGGATCTTCCCCACCACAGAGTTCACTTGGGTCCGTATTAGTCCCACATATTGGTCAATCTGTGCCTGGTTTTTCTCATAGACAATGGGCATGCTGAACATGGACACCACGGCCAGAATAAGCAGAGTCAGGCCATTGAAGAGAGCGCCCACATAGGTCAACAGCCACATCAGGACAGCAAACTTCAGTGAGTCGATGAGGTCCTGGACCAGGAACAGCCTACGGAGCTCCTTCATACAGGTGTTGGCGTAGAGCAGAGCCTTGTCAGCATATTTACCGATCTGATCCTGGGACAGAGAGATCTCCACCTGCTCCCACACTGACCACACTGAACTGGGTCAGAGAGAAGAGCAGCAGGAGCACACTGCCAAACACAGCTCCAGACTGCTTCACGTTCCTCCAGTAGAGCAGGTCAATGGCtggggggaggacagagacaggagagcagAGTTAGGATCCAGTGTTAGACCCAGCATTACACACTACAGCAGGGATCTCCAACTGGCGGGCCGAATTTGGCCCCCcaactt
>TU2244399
ggtatatgttgtgaaactgttattacttgttagatattgctgcactgtcggagctagaagcacaagcatttcgctacacccgcaataacatctgctaaacatgtgtatgtgaccaataaaatgtgatttgatttacacAATAAACACAGCAAACACATCAGTACCCTGGCCTTTCCAGCTACTCCAGGAGCACTCCTTCTTGATACCGTCTGCAGTGGCCTGCATGCTGATGATCAATCTCCCTGATTTTCCTTTCTCTTGGTCTTCTCCGTTTTCTTCTAGCTCTTCCTCTTCTTGTGCCACTGATTCACTCACTCATCTCACAAAGGCATGAATAGTTGGAATGATGAGATGcggagacgagagggagggagtcaAGGTTTCCAAGGTACTGCTGGCTCGCGGAAAAAACAGAATGAtctcttcctcttcctcctcctcgagTTCTGCAGGGCTCTTATCCATGTAGCCTCCCAGGGAGTCCAAGCTAGACAGCCCAGTGTCTACTAGGCTATGCAGGGGCCCCTGGCTCTGGTGCTGGTTGTGGACGTCATCACCATGGCTGATATCCATGTAGTTGTAGGCCTCGGTCTTCGACTCGGAGCCCCCCAGCAGGGACTTGGGCatctcatcaaccaggtcagtgATCGTCTTGGTGTTGGAGGAACCAAAGATGCTGTAGGAGTCGAAGGTGTCCTGGGAGGAGGGGCCAGAGGAGAGCTTCAGATCATCAGACAGGTAAGAGGCATCCCGGCCTGAGGGATGGCTCTGATTGGACAGGAGTGAGGTGTACAGGTCACCATCATCACTCATGGGCTTCTG

Function

symbol description
rtn1 Involved in negative regulation of amyloid-beta formation and neuron differentiation. Located in Golgi membrane and endoplasmic reticulum membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2244398 False 1350 lncRNA 0.43 6 22250058 22254771
TU2244399 True 822 TUCP 0.50 2 22268955 22274663

Neighbor

gene id symbol gene type direction distance location
LOC110504207 LOC106610980 coding upstream 66 22223114 ~ 22249992 (+)
kif15 kif15 coding upstream 43349 22186199 ~ 22206709 (+)
LOC110505613 LOC106610987 coding upstream 78158 22117768 ~ 22171900 (+)
zfyve28 LOC106610988 coding upstream 132928 22053375 ~ 22117130 (+)
LOC110505607 LOC106610991 coding upstream 234048 21999690 ~ 22016010 (+)
lrrc9 LOC106610979 coding downstream 42241 22297012 ~ 22318009 (+)
LOC110504208 LOC106598670 coding downstream 101203 22355974 ~ 22365214 (+)
ppm1aa LOC106610975 coding downstream 118186 22372957 ~ 22386710 (+)
six6a six6 coding downstream 210910 22465681 ~ 22473989 (+)
mnat1 mnat1 coding downstream 257823 22512594 ~ 22569987 (+)
G1962859 NA non-coding upstream 27768 22221994 ~ 22222290 (+)
G1962858 LOC106610983 non-coding upstream 28587 22220936 ~ 22221471 (+)
G1962840 NA non-coding upstream 68633 22179396 ~ 22181425 (+)
G1962838 LOC106610986 non-coding upstream 71321 22176207 ~ 22178737 (+)
G1962919 NA non-coding downstream 65670 22320441 ~ 22320899 (+)
G1962920 NA non-coding downstream 66181 22320952 ~ 22321322 (+)
G1962923 NA non-coding downstream 68183 22322954 ~ 22323185 (+)
G1962927 NA non-coding downstream 75194 22329965 ~ 22330177 (+)
G1962929 NA non-coding downstream 78463 22333234 ~ 22333659 (+)
LOC110505603 LOC106610998 other upstream 382025 21838453 ~ 21886964 (+)
G1962316 NA other upstream 406048 21792183 ~ 21844010 (+)
G1961492 NA other upstream 1181389 21067964 ~ 21068669 (+)
G1961468 NA other upstream 1210258 21039205 ~ 21039800 (+)
G1960977 NA other upstream 1427420 20822317 ~ 20822638 (+)
G1962880 rtn1 other downstream 14184 22250058 ~ 22274663 (+)
G1962949 NA other downstream 137820 22392591 ~ 22392956 (+)
G1963734 NA other downstream 663175 22917946 ~ 22918686 (+)
G1964177 NA other downstream 1351163 23605934 ~ 23613765 (+)
G1964499 NA other downstream 1801858 24076521 ~ 24076721 (+)

Expression


Co-expression Network