G1963317


Basic Information

Item Value
gene id G1963317
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22697689 ~ 22699363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2244903
cagcaaaccttgccacagctcgcattgatgtcccatcctggatgagcttcACTacttgagccacttgtgtgggtttagactccatctcatgctaccactagtgtgaaagcaccgccagcattcaaaagtgaccaaaacatcagccaggaagcataggaactgagaagtggtctgtggttatcacctgctgaaccactcctttattgggggtgtcttgctaattgcctataatttccacctgttgtctattccatttgcacaacagcatgtgaaatttattgtcaatcagtgttgcttcctaagtggacagcttgatttcacagaagtgtgaatgacttggagttacattgtgttgtttacgtgttcccttttttttttttgagcagtgtatattctgtGTCATGTCATGGAATATTGTGGTATCAATATAAACATGAATTCTTCACTCCAACAGAAGAATCCTGCAGTCAAATTAAAATTAGATACACATTAGATAACAAGGACAAAACTCTATTTGATTGGTACATACACAAATGTTGacacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgtttttgggctgttgctgggcaacacggactttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggacctggaaatgattcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacgtggtcccattcattctttcctttacacggatcagtcttcctggtccctttgcagaaaaaccgccccaaagcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcaactcagcattctttgtcctccaaacacgacgagttgagtttttaccaaaacgttctattttggtttcttctgaccatatgacattctcccaatcttcttctgggatcatccaaatgctctctagcaatcttcagacgggcctggacatgttctGGCTTAAgcagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtccccccgtgtggttctgggatttttgctcaccgttcttgtgatcattttgaccccacggggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccaacctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccaaagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagagtagcctcttaaaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2244903 True 1675 lncRNA 0.44 1 22697689 22699363

Neighbor

gene id symbol gene type direction distance location
LOC110505629 LOC106610969 coding upstream 1131 22665920 ~ 22696558 (+)
LOC110505630 NA coding upstream 17669 22678700 ~ 22680020 (+)
prkcha LOC100380676 coding upstream 42338 22604288 ~ 22655351 (+)
slc38a6 slc38a6 coding upstream 111731 22572457 ~ 22585958 (+)
mnat1 mnat1 coding upstream 127702 22512594 ~ 22569987 (+)
LOC110505633 LOC106610968 coding downstream 28366 22727729 ~ 22731299 (+)
LOC110504329 LOC105895945 coding downstream 65334 22764658 ~ 22768365 (+)
LOC110504209 NA coding downstream 71199 22770562 ~ 22780040 (+)
LOC110505634 2a5e coding downstream 93721 22793084 ~ 22865803 (+)
wdr89 wdr89 coding downstream 96113 22795476 ~ 22798055 (+)
G1963328 NA non-coding upstream 100698 22596553 ~ 22596991 (+)
G1963272 NA non-coding upstream 190050 22506682 ~ 22507639 (+)
G1963250 NA non-coding upstream 204199 22493280 ~ 22493490 (+)
G1963240 NA non-coding upstream 209589 22487870 ~ 22488100 (+)
G1963227 NA non-coding upstream 220142 22477301 ~ 22477547 (+)
G1963551 NA non-coding downstream 74078 22773441 ~ 22773648 (+)
G1963552 NA non-coding downstream 74313 22773676 ~ 22773930 (+)
G1963573 NA non-coding downstream 86675 22786038 ~ 22786497 (+)
G1963578 NA non-coding downstream 92802 22792165 ~ 22792399 (+)
G1962949 NA other upstream 304733 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 386888 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 423026 22250058 ~ 22274663 (+)
LOC110505603 LOC106610998 other upstream 829656 21838453 ~ 21886964 (+)
G1962316 NA other upstream 853679 21792183 ~ 21844010 (+)
G1963734 NA other downstream 218583 22917946 ~ 22918686 (+)
G1964177 NA other downstream 906571 23605934 ~ 23613765 (+)
G1964499 NA other downstream 1377158 24076521 ~ 24076721 (+)
G1965262 NA other downstream 1661074 24360437 ~ 24360985 (+)
G1965263 NA other downstream 1661725 24361088 ~ 24361482 (+)

Expression


Co-expression Network