G1963920 (LOC106610964)


Basic Information

Item Value
gene id G1963920
gene name LOC106610964
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23136819 ~ 23137210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2245549
ATTAATGAGTAAATGAATAAAAGCAGGACATATGCAGTGGATCAACAGATGTAATAATGACTTGTCGTCAACTTACCGGCCAAGCGAACTGGAATGGGATGACAATCTTTCCACCGTCGTTGATTCGGTTTTGGTTGTTTTTGGTGCTCTTAAATTGAAAAGTATTCCCACCGATAACGTTAGTAGATCCAGTTCCATAGATGCACAAGCCTGTGGTCGTGACCTCCGTTTGGTATTCCTTTAGACACACTCTGAAGTACGTATCACACTCATCCCTGCTACAGTGGAGATCCTGCGCGTTCCTTTCTCCGTCGCAGCAGTCCCCGTCCGACAACTGACCGTTAGCGTTCTGTACAGCAATCAACTGCAGCTCAAAAGAGCCCGAAGACTGG

Function

NR:

description
protein jagged-1b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2245549 True 392 lncRNA 0.46 1 23136819 23137210

Neighbor

gene id symbol gene type direction distance location
LOC110505634 2a5e coding upstream 271016 22793084 ~ 22865803 (+)
wdr89 wdr89 coding upstream 338764 22795476 ~ 22798055 (+)
LOC110504209 NA coding upstream 356779 22770562 ~ 22780040 (+)
LOC110504329 LOC105895945 coding upstream 368454 22764658 ~ 22768365 (+)
LOC110505633 LOC106610968 coding upstream 405520 22727729 ~ 22731299 (+)
LOC110505640 LOC106610963 coding downstream 171388 23308598 ~ 23315795 (+)
LOC110505643 LOC106610958 coding downstream 272149 23409359 ~ 23421308 (+)
LOC110505646 kcrt coding downstream 320448 23457658 ~ 23462167 (+)
LOC110505647 NA coding downstream 370825 23508035 ~ 23518659 (+)
LOC110505653 LOC106610949 coding downstream 559263 23696473 ~ 23704474 (+)
G1963914 NA non-coding upstream 3312 23133162 ~ 23133507 (+)
G1963903 LOC106610964 non-coding upstream 14526 23122055 ~ 23122293 (+)
G1963889 NA non-coding upstream 30723 23102712 ~ 23106096 (+)
G1963788 NA non-coding upstream 110189 22980068 ~ 23026630 (+)
G1963754 NA non-coding upstream 204464 22931997 ~ 22932355 (+)
G1963921 NA non-coding downstream 457 23137667 ~ 23138079 (+)
G1963934 NA non-coding downstream 16386 23153596 ~ 23163261 (+)
G1963944 NA non-coding downstream 33511 23170721 ~ 23170931 (+)
G1963945 NA non-coding downstream 33918 23171128 ~ 23171945 (+)
G1963948 NA non-coding downstream 36820 23174030 ~ 23174237 (+)
G1963734 NA other upstream 218133 22917946 ~ 22918686 (+)
G1962949 NA other upstream 743863 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 826018 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 862156 22250058 ~ 22274663 (+)
LOC110505603 LOC106610998 other upstream 1268786 21838453 ~ 21886964 (+)
G1964177 NA other downstream 468724 23605934 ~ 23613765 (+)
G1964499 NA other downstream 939311 24076521 ~ 24076721 (+)
G1965262 NA other downstream 1223227 24360437 ~ 24360985 (+)
G1965263 NA other downstream 1223878 24361088 ~ 24361482 (+)
G1965396 NA other downstream 1428521 24565731 ~ 24567147 (+)

Expression


Co-expression Network