G1963999


Basic Information

Item Value
gene id G1963999
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23251358 ~ 23251745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2245632
gaaatattcttattaaatacttttttcttcacatagttgaatgtgctgacaacaaaatcacacaaaaattatcaatggaaatcaaatttatcaacccatggaggtctggatttggagtcacactcaaaattaaagtggaaaaccacattacaggctgatccaactttgatgtaatgtccttaaaacaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtatgacctccctacaacgcctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcacagacctggactaaagcatccgccaactcctggacagtctgtggtgcaacgtggcgttggtggatggagcgggacatgatgttccag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2245632 True 388 lncRNA 0.45 1 23251358 23251745

Neighbor

gene id symbol gene type direction distance location
LOC110505634 2a5e coding upstream 385555 22793084 ~ 22865803 (+)
wdr89 wdr89 coding upstream 453303 22795476 ~ 22798055 (+)
LOC110504209 NA coding upstream 471318 22770562 ~ 22780040 (+)
LOC110504329 LOC105895945 coding upstream 482993 22764658 ~ 22768365 (+)
LOC110505633 LOC106610968 coding upstream 520059 22727729 ~ 22731299 (+)
LOC110505640 LOC106610963 coding downstream 56853 23308598 ~ 23315795 (+)
LOC110505643 LOC106610958 coding downstream 157614 23409359 ~ 23421308 (+)
LOC110505646 kcrt coding downstream 205913 23457658 ~ 23462167 (+)
LOC110505647 NA coding downstream 256290 23508035 ~ 23518659 (+)
LOC110505653 LOC106610949 coding downstream 444728 23696473 ~ 23704474 (+)
G1963981 NA non-coding upstream 28849 23222205 ~ 23222509 (+)
G1963948 NA non-coding upstream 77121 23174030 ~ 23174237 (+)
G1963945 NA non-coding upstream 79413 23171128 ~ 23171945 (+)
G1963944 NA non-coding upstream 80427 23170721 ~ 23170931 (+)
G1963934 NA non-coding upstream 88097 23153596 ~ 23163261 (+)
G1964001 LOC106609167 non-coding downstream 1581 23253326 ~ 23253547 (+)
G1964046 NA non-coding downstream 68971 23320716 ~ 23322247 (+)
G1964055 NA non-coding downstream 84051 23335796 ~ 23336014 (+)
G1964059 NA non-coding downstream 87283 23339028 ~ 23339433 (+)
G1964060 NA non-coding downstream 88971 23340716 ~ 23340915 (+)
G1963734 NA other upstream 332672 22917946 ~ 22918686 (+)
G1962949 NA other upstream 858402 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 940557 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 976695 22250058 ~ 22274663 (+)
LOC110505603 LOC106610998 other upstream 1383325 21838453 ~ 21886964 (+)
G1964177 NA other downstream 354189 23605934 ~ 23613765 (+)
G1964499 NA other downstream 824776 24076521 ~ 24076721 (+)
G1965262 NA other downstream 1108692 24360437 ~ 24360985 (+)
G1965263 NA other downstream 1109343 24361088 ~ 24361482 (+)
G1965396 NA other downstream 1313986 24565731 ~ 24567147 (+)

Expression


Co-expression Network