G1964001 (LOC106609167)


Basic Information

Item Value
gene id G1964001
gene name LOC106609167
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23253326 ~ 23253547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2245634
gatcggtacatccgaacatcacacctgcgggacaggtacaggatggcaacaacaactgcccgagttacaccaggaatgcacaatccctccagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggtctgttgtaaggcaggtcctcaccagacatcaccggcaacaatgtcgcctatgggcacaatcccaccgtcactggacc

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2245634 True 222 lncRNA 0.56 1 23253326 23253547

Neighbor

gene id symbol gene type direction distance location
LOC110505634 2a5e coding upstream 387523 22793084 ~ 22865803 (+)
wdr89 wdr89 coding upstream 455271 22795476 ~ 22798055 (+)
LOC110504209 NA coding upstream 473286 22770562 ~ 22780040 (+)
LOC110504329 LOC105895945 coding upstream 484961 22764658 ~ 22768365 (+)
LOC110505633 LOC106610968 coding upstream 522027 22727729 ~ 22731299 (+)
LOC110505640 LOC106610963 coding downstream 55051 23308598 ~ 23315795 (+)
LOC110505643 LOC106610958 coding downstream 155812 23409359 ~ 23421308 (+)
LOC110505646 kcrt coding downstream 204111 23457658 ~ 23462167 (+)
LOC110505647 NA coding downstream 254488 23508035 ~ 23518659 (+)
LOC110505653 LOC106610949 coding downstream 442926 23696473 ~ 23704474 (+)
G1963999 NA non-coding upstream 1581 23251358 ~ 23251745 (+)
G1963981 NA non-coding upstream 30817 23222205 ~ 23222509 (+)
G1963948 NA non-coding upstream 79089 23174030 ~ 23174237 (+)
G1963945 NA non-coding upstream 81381 23171128 ~ 23171945 (+)
G1963944 NA non-coding upstream 82395 23170721 ~ 23170931 (+)
G1964046 NA non-coding downstream 67169 23320716 ~ 23322247 (+)
G1964055 NA non-coding downstream 82249 23335796 ~ 23336014 (+)
G1964059 NA non-coding downstream 85481 23339028 ~ 23339433 (+)
G1964060 NA non-coding downstream 87169 23340716 ~ 23340915 (+)
G1964087 NA non-coding downstream 140577 23394124 ~ 23394367 (+)
G1963734 NA other upstream 334640 22917946 ~ 22918686 (+)
G1962949 NA other upstream 860370 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 942525 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 978663 22250058 ~ 22274663 (+)
LOC110505603 LOC106610998 other upstream 1385293 21838453 ~ 21886964 (+)
G1964177 NA other downstream 352387 23605934 ~ 23613765 (+)
G1964499 NA other downstream 822974 24076521 ~ 24076721 (+)
G1965262 NA other downstream 1106890 24360437 ~ 24360985 (+)
G1965263 NA other downstream 1107541 24361088 ~ 24361482 (+)
G1965396 NA other downstream 1312184 24565731 ~ 24567147 (+)

Expression


Co-expression Network