G1964728


Basic Information

Item Value
gene id G1964728
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23425563 ~ 23428841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2246459
gctgtaggatgaaattggctccaattaagcgctgtccacagggtatggcatggcattgcaaaatggagtgatggaTCTTGAAGAAGAAAGGctcttttaccctgtacaaatctcccactttactgCCACCAAAGCACCCCAAGACTATCACATCGTCTCCACCATGCTTGAGAGATggcatcaagcactcctccaacatattttcatttttttctgcatctcacgaatgttcCTCTTTGTGATCCGAAGAcgtcaaacttagatttgtctgtccataacacttttttccaatctcctctgtccagtgtctgtgttcttttgcccatcttaatattttattggccagtctaagatatggctttttctttgcaactctgcctagaaggcatcCCGGAGTCATCTCTTCACTGTTTaggttgagacgggtgttttgaaggtactatttaatgaagctgccagttgaggacttgtgagacatctgtttctcaaactaaacactctaatgcacttgtcctcttgctcagttgtgcaccgggacttcccactctttctattctcattagagccagtttgcactgttctgtgaagggagacgtacacagcgttgtacgagatcttcagtttcttggcaatttctcacatggaatagccttaatttctcagaacaagaatacactgacgagtttcagaaaaaaggtctttgtttctggccattttgagcctgtaatcgaacccacaaacgctgatgctccagatactcaactagtctaaggaaggccggttttattgcttctttaaatcagaacaacagttttcagctgtgctaacataactgcaaaagggttttctaatgatcaattagccttttaaaattataaactcgGATTAGCTAACAcgacatgccattggaacacaggagagatggttgctgataatgggcctctgtaagcctatgtagatattccataaaaactCTGCCttgtccagctacaatagtcatttataacattaacaatgtatttctgatcaatttgatgttattttaaatggacaaaaaaaaagcttttctttcaaaaacaaggacatttctaagtgaccccaaacttttgaacggtagtgtatatttgtaaacaacagctggtgcacaatatctaaggaaatATTGAGGTTtagctcgcctgaagtagagtatctcatgataagctgtagaccacactacctacctagttttcatctgtatttttcgtagccgtctatataccaccacagactgatgctgacactaaaaccgcactcaaatGAGATGTATACCTCCAAAACCAAACagaaaaacgctcatccagatgCGGCGCTTCCAGTGGccgaggactttaatgcagggaaactgaaatcatgttaaatgtgcaatcagagggggaaaaaaattgtagagcACCTTTCTTCCACaaacagagacgcgtacaaagctctccctccatttggcaaatctgaccataattctagcctcccgattcctgcttacaagcaaaaattaaagcaggaagcaccagtgactcggtctatgaagaagtggtcagatgaagcagatgctaaactacaggactgttttgctatcacagactgaaacatgttccgggattcttccgatggcattgaggagtacaccacatcagtcactggcttcatcaataagcgcatcgatgacgtcgtccccacagtgactgtacgtacatacccctaccagaagcaatggattacaggcaacattcgcactgagctgaagggtagagctgccgctttcaaggaacggcactctaacccggaagcttataagatatCCCGCCATGctctccgacaaaccatcaaaaaggcaaagggtcaatacaggagtaagatcgaatcatactacaccggatCTGACGCTAgtggatgtggcagggtttgcaaactactacaaagggaagcacagctgagagctgcccagagACACGAGCCTACCATATGAGCTAAATAGCTTCTATGCTCGcgtcgaggcaagtaacactgaaacatgcatgagaacatcagctgttctggacgactgtgtgatcacgctcttcaCAGCCAATGTAagaccaggacgtgtactccgagcatgcgctgaccaactggcaagtgtcttcactgacattttcaacttctctctgacagagtctgtaataccaacatgtttcaagcagaccaccatagtccctgtgcccatgaacactaaggtaacctgcctaaatgactaccgacccatagcactcacatctgtagccatgaaatgctttgaaaggctggtcatgactcatgactcaaaggctggtcatgacatcaacaccattatcccagaaaccctagacccactccaatttgcataacgccccaacagatccacagatgatgcagtctctattgcactccacactgccctttcatacctggacaaaaggaacacctatgtgagaatgctattcattgactacagctcagcattcaacaccatagtgcccttagAGCTCATCACTAAGGctatggaccctgggactaaacacctccctctgcaactggatcctggaattctTGACGGGCagtccccaggtggtaaaggtaggtgacaacacatccgccaaactgatcctcaacacgggggcccttcaggggtgcgtactcagtcccgtcctgtattccctgttcactcatgaccgcacggccatgcacaactccaaaaccatcattaagtttgccgatgacacaagtagtaggcctgatcaccgtcaacaatgaaacagcctatagggaggtcgaGATcctgtgtggtgcaaggacaaaaacctctctctcaatgtgattaagacaaaggagatgattgtggactacaggaaaaggaggacctagcacacccccattctcatcgacggggctgtagtggagcaggttgagagcttcaagttccttggtgtccacatcaccaacaaacgaacatggtccaagcacaccatgacaccatggtgatcatttatcactccagtgttaatctgcaaaattgtaattattcgcc
>TU2246460
tggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccccccccccaccccccgggatttttttttttttttaatgaaaatactgccccctagcaccAACAGGTTTTAATTGTTCtagcatagtttggagctgtgctttggatcattgtcctgctgtaggatgaaattggctccaattaagcgctgtccacagggtatggcatggcattgcaaaatggagtgatggaTCTTGAAGAAGAAAGGctcttttaccctgtacaaatctcccactttactgCCACCAAAGCACCCCAAGACTATCACATCGTCTCCACCATGCTTGAGAGATggcatcaagcactcctccaacatattttcatttttttctgcatctcacgaatgttcCTCTTTGTGATCCGAAGAcgtcaaacttagatttgtctgtccataacacttttttccaatctcctctgtccagtgtctgtgttcttttgcccatcttaatattttattggccagtctaagatatggctttttctttgcaactctgcctagaaggcatcCCGGAGTCATCTCTTCACTGTTTaggttgagacgggtgttttgaaggtactatttaatgaagctgccagttgaggacttgtgagacatctgtttctcaaactaaacactctaatgcacttgtcctcttgctcagttgtgcaccgggacttcccactctttctattctcattagagccagtttgcactgttctgtgaagggagacgtacacagcgttgtacgagatcttcagtttcttggcaatttctcacatggaatagccttaatttctcagaacaagaatacactgacgagtttcagaaaaaaggtctttgtttctggccattttgagcctgtaatcgaacccacaaacgctgatgctccagatactcaactagtctaaggaaggccggttttattgcttctttaaatcagaacaacagttttcagctgtgctaacataactgcaaaagggttttctaatgatcaattagccttttaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2246459 False 3082 TUCP 0.45 1 23425563 23428644
TU2246460 True 1067 lncRNA 0.42 1 23427775 23428841

Neighbor

gene id symbol gene type direction distance location
LOC110505642 klc1 coding downstream 34696 23357655 ~ 23393079 (-)
LOC110505641 LOC106610961 coding downstream 73765 23344403 ~ 23354010 (-)
brf1a LOC106610962 coding downstream 95884 23267544 ~ 23331891 (-)
LOC110505636 LOC106610964 coding downstream 289615 23106379 ~ 23138160 (-)
LOC110504210 NA coding downstream 472826 22925846 ~ 22954949 (-)
trmt61a trm61 coding upstream 14081 23442922 ~ 23456284 (-)
LOC110505645 LOC106610955 coding upstream 33394 23462235 ~ 23501934 (-)
if5 if5 coding upstream 73993 23502834 ~ 23509400 (-)
LOC100136135 LOC106610954 coding upstream 90569 23519410 ~ 23527200 (-)
LOC110505649 LOC106610953 coding upstream 102626 23531467 ~ 23549311 (-)
G1964726 LOC106610958 non-coding downstream 3714 23419972 ~ 23424061 (-)
G1964722 NA non-coding downstream 13203 23414343 ~ 23414572 (-)
G1964713 NA non-coding downstream 23505 23404010 ~ 23404270 (-)
G1964706 NA non-coding downstream 33531 23394025 ~ 23394244 (-)
G1964690 NA non-coding downstream 71640 23355843 ~ 23356135 (-)
G1964729 NA non-coding upstream 39 23428880 ~ 23429128 (-)
G1964739 NA non-coding upstream 9743 23438584 ~ 23438919 (-)
G1964741 NA non-coding upstream 11766 23440607 ~ 23440831 (-)
G1964742 NA non-coding upstream 12112 23440953 ~ 23441239 (-)
G1964743 NA non-coding upstream 12713 23441554 ~ 23441766 (-)
G1964592 LOC106569888 other downstream 205272 23221973 ~ 23222503 (-)
G1964564 NA other downstream 259662 23165032 ~ 23168113 (-)
G1963846 NA other downstream 382071 23036891 ~ 23045704 (-)
G1962803 LOC106610988 other downstream 1331279 22095519 ~ 22096496 (-)
G1962524 LOC106610994 other downstream 1430205 21990844 ~ 21997570 (-)
G1967882 NA other upstream 3106523 26535364 ~ 26538708 (-)
LOC110505716 LOC106024658 other upstream 3287843 26716542 ~ 26765410 (-)
G1969699 LOC100380709 other upstream 4671080 28099921 ~ 28101436 (-)
G1969724 NA other upstream 4714597 28143438 ~ 28143762 (-)
G1970606 NA other upstream 5429099 28857940 ~ 28861987 (-)

Expression


Co-expression Network