G1964290 (LOC106610943)


Basic Information

Item Value
gene id G1964290
gene name LOC106610943
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23787358 ~ 23791749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2245959
tcttaatttcaGTCACATTATAATGTATTAAAATGCAAAGATATAAAATTAAATAGATACTGACTCATGTAACATTTGTATATTTTTCTGATGAAACTACATGTTTTAAAATATGGGTTATCTTATCTCTTATTACCAATATCGCTATAGATACTACTACTATCTCTGTGGTATCTCATAGTATGTCTGAATTGTCACAGGTTAATAGTCTTTTCAGGAGGTAATGTTACAGTAATAATCCATCACACAGCATCAACTTTAGTGCAACAATCTCCAAACATTAGCATCAGAGGGGTATGTCACCAAGAAAGATCAATAAGTTAGCCTGTCAAACGTTGAACCCtccagaggggtatactacaaagctaGATCAAGGAGTTAGCCGGTTAACTTGCctgaatattttttaaatacctttgtttttttggggggggggggggggggggtaagctTAAAATGGGGCAgacccaggacaacaacacaatatCAAAGTCCTATAAAACACTATTTTCATCATTCTCATTCAGTTTGGACATTCTAAATGGAAGAACATAAATCAGCAGTACATAACTAGAATCAATATTGCTAGGGGCAACAAGAGATATGTCCAAGCTGAGGGACATGGACACATCAACATTAGAAAAATGTAAACCCTCACCAAATAAAAAcactaatatatttattttttaaactcctTGAGATGAACCAACTATGTCGTTTTCAAGGGGGTCCTGTGAGTTCAAAGGAAGTAATGACTTATGTCATAACTTCTATATCACACCTGTACAATACATCCATGTTAAGTTTGGTTAAAGGTAGATTCAACAATATGACATCATCATTTCTGTTAACTGCAGAAATTCATTTTACTGTTGATTTCTGTAAGTAGGAAGTTGACACATATGATGATGTCATATTGCAGTGTACCTTTAACCTGCTCTGTGCTTATAAGAGCTGGCTCCAGCTCAGCCTGATGCCCTGACtgactttattttttataaaactaGTTTCTGATATGAACCTGGAACAATACAGCCTAATCTCTGAGCCGATTGCGTCTCAAACTTTGGCTACAAAGTTCAGACCCTTTACCTGCTGTTACTTTTGACccagaacagaaacagagagaggttaAAGGTCAAATGTAGAATGCTGAGTCCACTTGTGACACCAAATGCAGACGCTCAAGTGTATTATTGCTTTTATAAATAAAGTTAATATATATTTGCACCATATGAAGTTCATATATGTTCATATATATTTGCCAAAAAAATAAGTTCATATTATGTTCATCTATATTTGCACCAAATAAAGTTcacatatgtacagtaccagtcaaaagtttggacacacctactcattacagggtttttctttattttgtactattttctacattgtagaataatagttaagaaatcaaaactatgacataacacatggaatcatgtaataaccaaaaaagtgttaaacaaatcaaagtgtattttatatttgagattcttcaaagtagccaccctttggcttgattacagctgtgcacactcttggcattctctcaaccagcttcatgtcaCCTGgattgttaatttgtggaatttctttccttcttaatgcatttgagaaagtcagttgtgttatgacaaagtagggatggtatacagaagataggcctatttggtaaaacaccaagttcatattatggcaagaacagctcaaataagcaaagagaaacgacattccttcattactttaagacatgaaggtcagtcaatctggaaaatgtcaagaaattctaacgtttcttcaagtgcattcgcaaaaccatcaagcacaatgatgaaactggctctcatgaggaccgctacaggaaaggaagacccagagttacatctgctacagaggataagttcattagagttatctgCACCTCTGAAgttgaagcccaaataaatgcttcacagagttcaagtaacagacacacctcaacatcaactgttcagaggagactgcgtgaatcaggccttcatggttgaattgctgcaaagaaaccactactaaaggacaccaataagaagagacttgattgggccaagaaacatgagcaatagacattagaccggtggaaatttgtccttcggtctgatgaggtcaaatttgagatttttggttccaaccgccgtgtctttgtgaacgGATGgtatccacatgtgtggttccaaccATGAAACACGGAGGAGGTATgatggtactttgctggtgacactgccagtgatttatttagaattcaaggcacacttaaccagaatggctactacagcattctgaaacgataagccatcccatctggtttgtgcttagtgggactatcatttgtttttcaacaggacaatgacccaacacacctccagactgtgtaagggcaatttgaccaagaatgaaggtgatggattgctgcatcagatgtgcctccacaatcacccaacatcaacccaattgagttggaccgcatagtgaaagaaaagcagacaagtgctcagcatatgtgggaactccttcaagacagttggaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaagaatgtaaaatataaactatattttgatttgtttaagattttttttggttactacatgattccatatgtgttatttcatagttctgacaTCTTCAccattactctacaatgtagaaaatagtaaaaataaagaaaagccctggaatgagtaggtgtgtccaaacttttgactggtactgtatattcatatATATTTGCACCATATAAAGTTGATCGGTGGAAGGCTTAGTGTTGATTGGTGGAGGGATGGTCAGACGTAGTCAGGTAAAGGTCTCTGTCACCATGACGACCTCAGGGATGAGTTCATCAGAAAGAGAATCACATATCCGTATTCTACATGACAGAAAATCTTATCTGTTCTACACAATTCATGTCTATCTTAACGTTCTGTAATGTTGTGCCTTCCTGAGCAAACAAACAAGCAAACATAATTTACTATGACTCACAGATCaggcacaacacacacagtacacacacacatctctgtacatataaatatatacacattCAGTTAAAAATTAAAGAGACCACACACCCAGTTAACCAAACTAAAGAGAATAAACACCCAGTTAACCAAACTAAAGAGAATACACACCCAGTTAACCAAACTAAAGAGAATACACACCCAGTTAACCAAACTAAAGATAATAAACTCCCAGCTATAGGAGACAGCTTTCAGGCCGCTGTTTAAATTACATTCACATTTTTTCTAATTTCATATTATCTTTTAGTATTATTCATGAAGATGTGAAAATAACATGACATGCTGTCTTCTGTCACCATCCAGTATTCTCAGCAGAGTGAGGAATACAAAACAGAGATGAAGAGATAAAAACAGAGAGAAGAGTCACATTTGTGTGTATCAGTGtcgcttccgtccctctccttgccccaacctgagcttgaaccagggaccctctgaacagatggacaaccatcacccacaaagcatcgttacctgTTACTCCACAAAAGCTGTGGTCCTTGCatagcaagggaaacaactacttctagGTCAGAGCGGATGAGGTCACCGGTTGAACACTACTAGCGAGCACCACTaaatagctagccatttcacatcggttacatgtgCGCACTTGTAaatatgtgtgtttgtctatgtgtgtatgtgtcagaaaGAAGACTCGTACTGCAGTAGTTCATAGAGCAGAGGTCTGTCCCTGTATCGTATGCCTGCAGCTGCAGGCGTCAGGTACTGTAGTAGGTTGATGGTCCTTCGCAGCCGTCTGTCCACGTAGTGAGCGTCCCAGGCTGGGTAACGTTTCCTGGGCATGTCAATCTTTATCAGAGGACCTTCGAAACGCCTCGAGGTGGGGGGCTCCAAACGCACCTGGAACACCGGCAGACAGCCTTCTGCGATGATGTCATCACTGTGAAACGGGGCAGCAAGGTGGGCTGGGGTGGGCGGAGCTGAAGGGGGCAAGGGGTTACCCCACAGCAGCTCATCACACCAGGTCGATGccggggtggggtgtgtgtgtgaggggtgaaGAAGGCCGTAGTACAGAAGCATCACCAGTACTCCACCCGTAAAGGACAGGTAGACACCACACAACGCTGGAACCGCGTAGCTGTCTGTCTCTTCATGGTCACGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2245959 True 4272 lncRNA 0.40 2 23787358 23791749

Neighbor

gene id symbol gene type direction distance location
LOC110504213 NA coding upstream 26055 23756983 ~ 23761303 (+)
LOC110505657 cdc5l coding upstream 41032 23737748 ~ 23746326 (+)
napba LOC106610947 coding upstream 61689 23718491 ~ 23725669 (+)
hao1 hao1 coding upstream 80007 23704664 ~ 23707351 (+)
LOC110505653 LOC106610949 coding upstream 82884 23696473 ~ 23704474 (+)
LOC110505665 ampm1 coding downstream 181147 23972896 ~ 23991462 (+)
enpep LOC106610934 coding downstream 241133 24032882 ~ 24058913 (+)
LOC110505673 NA coding downstream 286972 24078721 ~ 24080745 (+)
LOC110505676 LOC106610929 coding downstream 443529 24235278 ~ 24289662 (+)
LOC110505678 LOC106611137 coding downstream 521725 24313474 ~ 24355303 (+)
G1964303 NA non-coding upstream 779 23786368 ~ 23786579 (+)
G1964302 NA non-coding upstream 4473 23782439 ~ 23782885 (+)
G1964301 NA non-coding upstream 5659 23781195 ~ 23781699 (+)
G1964288 NA non-coding upstream 26870 23760269 ~ 23760488 (+)
G1964278 NA non-coding upstream 58662 23728457 ~ 23728696 (+)
G1964309 LOC106610942 non-coding downstream 12735 23804484 ~ 23805220 (+)
G1964377 NA non-coding downstream 91533 23883282 ~ 23951945 (+)
G1964385 NA non-coding downstream 100255 23892004 ~ 23963668 (+)
G1964442 NA non-coding downstream 201580 23993329 ~ 23993603 (+)
G1964443 NA non-coding downstream 202256 23994005 ~ 23994253 (+)
G1964177 NA other upstream 173593 23605934 ~ 23613765 (+)
G1963734 NA other upstream 868672 22917946 ~ 22918686 (+)
G1962949 NA other upstream 1394402 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 1476557 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 1512695 22250058 ~ 22274663 (+)
G1964499 NA other downstream 284772 24076521 ~ 24076721 (+)
G1965262 NA other downstream 568688 24360437 ~ 24360985 (+)
G1965263 NA other downstream 569339 24361088 ~ 24361482 (+)
G1965396 NA other downstream 773982 24565731 ~ 24567147 (+)
LOC110505697 ypel5 other downstream 997378 24788926 ~ 24791594 (+)

Expression


Co-expression Network