G1964309 (LOC106610942)


Basic Information

Item Value
gene id G1964309
gene name LOC106610942
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 23804484 ~ 23805220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2245983
CAGCTCTGCAGCACCTTTCTCAATGTTGATGACCGGCGCCTTGGGGGGCAGGTAGGGGACTGGACCCCATGTGGACAATGCTCGTTTGCTTGTGTCAAACTGCTGGGTGAAAAACTCCTGCAGCTTCATCCCAATCTTGATGAGGTCGGGGGTAGTGGAGCGCGAGATGATCACCTGGAAGATATCCCACTGCAAGTCCCCTTGGACAAATATCttacTTCTCTGATAGGCTTGTCTCCACAGTGCACAGGTTGACCTTCCACTCATCCTTAAGCTTCAGGTCTGCGTTGCTGAAGACGCCCATGAGGATGCTGGAGCCCATGTAGTCCACACGGGCCTCCGTGGAACCCATGGTGATCTGGATGTTATGGCTGGGCTGCTGGTTGGGGTGCTCCGAGATGTGGGCTTCAACAAACATGTGTTGTTAGGATCGGCAGAGGGATTTCAAGTTCTACTCGTTTGACAGGGATATTTAAGTTAGAGGTGGATGCATTTATCATTTAAAAACACCAAGACCCGAagccagagttcaatctttgaCATCC

Function

NR:

description
PREDICTED: uncharacterized protein KIAA1109-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2245983 True 545 lncRNA 0.51 2 23804484 23805220

Neighbor

gene id symbol gene type direction distance location
LOC110504213 NA coding upstream 43181 23756983 ~ 23761303 (+)
LOC110505657 cdc5l coding upstream 58158 23737748 ~ 23746326 (+)
napba LOC106610947 coding upstream 78815 23718491 ~ 23725669 (+)
hao1 hao1 coding upstream 97133 23704664 ~ 23707351 (+)
LOC110505653 LOC106610949 coding upstream 100010 23696473 ~ 23704474 (+)
LOC110505665 ampm1 coding downstream 167676 23972896 ~ 23991462 (+)
enpep LOC106610934 coding downstream 227662 24032882 ~ 24058913 (+)
LOC110505673 NA coding downstream 273501 24078721 ~ 24080745 (+)
LOC110505676 LOC106610929 coding downstream 430058 24235278 ~ 24289662 (+)
LOC110505678 LOC106611137 coding downstream 508254 24313474 ~ 24355303 (+)
G1964290 LOC106610943 non-coding upstream 12735 23787358 ~ 23791749 (+)
G1964303 NA non-coding upstream 17905 23786368 ~ 23786579 (+)
G1964302 NA non-coding upstream 21599 23782439 ~ 23782885 (+)
G1964301 NA non-coding upstream 22785 23781195 ~ 23781699 (+)
G1964288 NA non-coding upstream 43996 23760269 ~ 23760488 (+)
G1964377 NA non-coding downstream 78062 23883282 ~ 23951945 (+)
G1964385 NA non-coding downstream 86784 23892004 ~ 23963668 (+)
G1964442 NA non-coding downstream 188109 23993329 ~ 23993603 (+)
G1964443 NA non-coding downstream 188785 23994005 ~ 23994253 (+)
G1964445 NA non-coding downstream 189931 23995151 ~ 23995555 (+)
G1964177 NA other upstream 190719 23605934 ~ 23613765 (+)
G1963734 NA other upstream 885798 22917946 ~ 22918686 (+)
G1962949 NA other upstream 1411528 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 1493683 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 1529821 22250058 ~ 22274663 (+)
G1964499 NA other downstream 271301 24076521 ~ 24076721 (+)
G1965262 NA other downstream 555217 24360437 ~ 24360985 (+)
G1965263 NA other downstream 555868 24361088 ~ 24361482 (+)
G1965396 NA other downstream 760511 24565731 ~ 24567147 (+)
LOC110505697 ypel5 other downstream 983907 24788926 ~ 24791594 (+)

Expression


Co-expression Network