G1964468


Basic Information

Item Value
gene id G1964468
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24020241 ~ 24020560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2246166
acaaaacccactgagtcgatgattgctccgaaagccttttggagtgggcctgtggacttttccatgtgaatattaaagtcaccaaatattagaatattatctgctatgactacaatataagcaatgtgcttaatattaggaatgttgataaataaatatagtaggcctaggcTTTAGAAATCTGATGGATCCTCTTTTTAATAAAGGCTGTcactgttttctcacgcaattgtatagcctatagaaatgttgtgcaacaaaCTCATgtgctctcatgaagtgtttgattagccTTGCATTGATGTcggagtgattagagg

Function

NR:

description
ORF2 protein

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2246166 True 320 lncRNA 0.37 1 24020241 24020560

Neighbor

gene id symbol gene type direction distance location
LOC110505665 ampm1 coding upstream 28779 23972896 ~ 23991462 (+)
LOC110504213 NA coding upstream 258938 23756983 ~ 23761303 (+)
LOC110505657 cdc5l coding upstream 273915 23737748 ~ 23746326 (+)
napba LOC106610947 coding upstream 294572 23718491 ~ 23725669 (+)
hao1 hao1 coding upstream 312890 23704664 ~ 23707351 (+)
enpep LOC106610934 coding downstream 12322 24032882 ~ 24058913 (+)
LOC110505673 NA coding downstream 58161 24078721 ~ 24080745 (+)
LOC110505676 LOC106610929 coding downstream 214718 24235278 ~ 24289662 (+)
LOC110505678 LOC106611137 coding downstream 292914 24313474 ~ 24355303 (+)
zgc:123321 yipf5 coding downstream 355267 24375827 ~ 24378263 (+)
G1964467 NA non-coding upstream 89 24019927 ~ 24020152 (+)
G1964445 NA non-coding upstream 24686 23995151 ~ 23995555 (+)
G1964443 NA non-coding upstream 25988 23994005 ~ 23994253 (+)
G1964442 NA non-coding upstream 26638 23993329 ~ 23993603 (+)
G1964385 NA non-coding upstream 56573 23892004 ~ 23963668 (+)
G1964489 LOC106610933 non-coding downstream 30036 24050596 ~ 24068616 (+)
G1964501 NA non-coding downstream 66706 24087266 ~ 24087467 (+)
G1965150 NA non-coding downstream 176431 24196991 ~ 24197208 (+)
G1965154 NA non-coding downstream 178755 24199315 ~ 24199618 (+)
G1965160 NA non-coding downstream 182726 24203286 ~ 24203490 (+)
G1964177 NA other upstream 406476 23605934 ~ 23613765 (+)
G1963734 NA other upstream 1101555 22917946 ~ 22918686 (+)
G1962949 NA other upstream 1627285 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 1709440 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 1745578 22250058 ~ 22274663 (+)
G1964499 NA other downstream 55961 24076521 ~ 24076721 (+)
G1965262 NA other downstream 339877 24360437 ~ 24360985 (+)
G1965263 NA other downstream 340528 24361088 ~ 24361482 (+)
G1965396 NA other downstream 545171 24565731 ~ 24567147 (+)
LOC110505697 ypel5 other downstream 768567 24788926 ~ 24791594 (+)

Expression


Co-expression Network