G1964489 (LOC106610933)


Basic Information

Item Value
gene id G1964489
gene name LOC106610933
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24050596 ~ 24068616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2246188
ttttttttttacagCTTTAACACTTGACTTTATTGAACATGCATTAAGCAATAAATTCAACATCCGTGACATTGTTAATCTTTTTAACTACATCCtccccacaaaaaaaaacagatcacaattgatttaacacacacacacacacacacatgcaacataTATCTTACTTTAATAAGAAAATAAGTGTTTTTTTGTCattgaaataaaaaacaaatattgGACTAAAATGTATTTATCAGTAGAAATAATACAATAATTCAAGAAAATAAATGTTGACAACAAACTAAGAGACTAAGCCATGGAAGATGAAGGCTGGGCATCTACATGACACGTTTCATTGGTTTGGCATTTTATAAAGTTTTATTTTTGAATAAGGGTTTATTACCAATAATCATATAGTTGGAGTCTCCTGCCTTAATCATATTCTCATTGGCTATTATTAGTATAGGAAGatatacagtagcctacttgaaTATTATCCAGATGTTATccaaacagcaacaacaacaaaaaatgtataaaacattcaGATTTTTGCAAAAGGCACAGCTAGTTTCCATAAAGCAGTTCCAGGCACTGATTTTACACAGAGAgctcaattctgatatttttcaacaaattggtcttttgaccaatcagatcagctctttcaCCAATAAATGGGCAAAACATCAGAATTGGGCTTCATGTGTGAACACAGTCTTTAAGGCATGGGATGGGGGGGAGATTGATTAGACTCAACTACCTCCATAAATCTTCATTCAAACTGATCAATATCCTCTGGGTTGTCCTGGAATCCAGAGGTCACTATCTCTCGCAGTTTATTTGTTTCCTTTTCAGATGGTGGGGGTAATACTGCATTTAGCTCATATTCAATTTTCTCAAGTCTTGCTTTGGTCCTTGCCTTGTGAAGTTCCTTGTTCTTCAGGACAAGAGCTTTGATTTCATGTTCGGCGTCATCACAAGATGCAGCAAATATTTGCCGTTCAGCTTTGAAACGTGGGTCTTTGGGATCCAAAGCCATGAGTCTTCCTAGGCTGCCAACTCTGTCCATCAAGTACTTGCTGGAGACCTCAGTGTAGGTTCCAGAGATCATATTCACCAGGTGTGCAATGTTGGAAGCTTGAAATGCCTGTTGGTATATCATATCCTTCAAGAACATACTTGAGTCATATTTCAGGTGTGGATTCCTGGCTGTTTTGACAAAATCCTGCAGGGATGTCTTCAGACAGGTGTCAATGATGTTTGACACCATCTGGAAGAATTGCACCATCTTTTGCCATTTCTCCTGCAGCTCTCCCATTGCATTTAGACCTTCAGCCAGAATCCTGATGGTGGTGTCAAAGTCAATTTCCTCTACATGAAGTTGTCTCATTTTGTTGAGGGTTTCGGCTAGCCTTATTTTCTTTTCCTCCATTTTTTCCAGGGATTTTTCATACATCTCGCTGGCTAGTGCAAGCTGGGCTTTCATCTGCTCTATGCGGAAGTGGGCATTTTCTGTCGCAGTCTGACTTGCAGATCCTGAGCTTGCGCTTCGTGCTTTGCTCATTCCGGGCGGATTAACAGAAAAGGCAGatgtttttgtgtatttttttccTGAGGAATCAAACTTCTGTGCAGAGGTCATTAGCTTCCTGATTCTCTGGATCAGTTCTTTGTTCTTGGCCTCATCGTCATGCTTGCCCTCAGGAGCCAATGCACTTAGGTCAGAGCAGATGGTAATGCCCTGTTCACAAATTTTCTCTGCCTGAGGTTTTACGGGACATTGGTCTACGTCTTTTATGTTTGACTGCACATCTTCGATTTGTGTCTTCAACCAATCAACAATCAACTGTCCTGTCTTTTCATCTAAAAACTTTGACCATTCGATTTGATCCTTTTGAATAAGGCCAACTAAGGATTGGGCAATAGCAAGAAGCATAGAAGACTTGCTAACTATATTGTTTGTTGCAAACATGTCTTTTGGACTTCCTGATGTATCATATTTTGTATGTGTATCACTACTGTCCGCTGCAATTGTGGCATTTGTTGCTCCTACAATTAAAGAGTTAACACAATTGGTGAATCCCTCTACAAAGTTCATTCCGATGACGTCCCATCCTGACGGCATGGAGTCGATAGCCTTTTGGAAGTTTTTATTAGCCTCTTCAAGCTTCTTGCCATATTTATTAAATGCCTCTTCAGCTTGTCTATTTTCCTCCTGTAGCATGGTTTTCTTGCATTTTTCGTCCTCCAGCATCTCCCTAACCTCTTTCAGGTGACTGCCATATTTCTGTTTGGCGCATGTGCAGGTCTCTAGAAGCTCTGTAATCAATTCAGTGACATCAAGGAACTTACTTTCAACAGATTTGGCCAGTTCTACACAGCTGGTTGATATGTTGGCAATGCTATCTAATGTATCAGGGAGAAGGCTTTTAACAAGTACATCATCATTCTGGAGAAGTATCTGTACAGTTCTCTTGATGTATGTTGGCACATTTTGTGTGTGTAAGAAAATCTGGTCCATGCTCTTGTGGGCTTGGTTAAAGGCTCGCCAACCTGAATTGCACACCTGCATGAGACAGGCACGGAATGAATCAGGATATTTGATGAACTTGAATCCGCCTTCTGGATTTCCATCCCTGATAGAGAAGTCTTGTTTGGAGGAGATGAAGACTAGCTCACCCAGGAAGGCTATTGACATTGGGGCTGGAGTCAAGTAGTTCTCCCAGTTAGCATGAGCTTGAGTAAGGATTGCAGTGTCCTCTCTGCATTGAGATGCCTTGGTTAAGCTACTTGTAGCTTTGATGAGCTCCTTGGATGCCA

Function

NR:

description
uncharacterized protein LOC110505672

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2246188 True 2805 lncRNA 0.40 2 24050596 24068616

Neighbor

gene id symbol gene type direction distance location
LOC110505665 ampm1 coding upstream 59134 23972896 ~ 23991462 (+)
LOC110504213 NA coding upstream 289293 23756983 ~ 23761303 (+)
LOC110505657 cdc5l coding upstream 304270 23737748 ~ 23746326 (+)
napba LOC106610947 coding upstream 324927 23718491 ~ 23725669 (+)
hao1 hao1 coding upstream 343245 23704664 ~ 23707351 (+)
LOC110505673 NA coding downstream 10105 24078721 ~ 24080745 (+)
LOC110505676 LOC106610929 coding downstream 166662 24235278 ~ 24289662 (+)
LOC110505678 LOC106611137 coding downstream 244858 24313474 ~ 24355303 (+)
zgc:123321 yipf5 coding downstream 307211 24375827 ~ 24378263 (+)
utp25 diexf coding downstream 316523 24385139 ~ 24391050 (+)
G1964468 NA non-coding upstream 30036 24020241 ~ 24020560 (+)
G1964467 NA non-coding upstream 30444 24019927 ~ 24020152 (+)
G1964445 NA non-coding upstream 55041 23995151 ~ 23995555 (+)
G1964443 NA non-coding upstream 56343 23994005 ~ 23994253 (+)
G1964442 NA non-coding upstream 56993 23993329 ~ 23993603 (+)
G1964501 NA non-coding downstream 18650 24087266 ~ 24087467 (+)
G1965150 NA non-coding downstream 128375 24196991 ~ 24197208 (+)
G1965154 NA non-coding downstream 130699 24199315 ~ 24199618 (+)
G1965160 NA non-coding downstream 134670 24203286 ~ 24203490 (+)
G1965169 NA non-coding downstream 140347 24208963 ~ 24209294 (+)
G1964177 NA other upstream 436831 23605934 ~ 23613765 (+)
G1963734 NA other upstream 1131910 22917946 ~ 22918686 (+)
G1962949 NA other upstream 1657640 22392591 ~ 22392956 (+)
lrrc9 LOC106610979 other upstream 1739795 22297012 ~ 22318009 (+)
G1962880 rtn1 other upstream 1775933 22250058 ~ 22274663 (+)
G1964499 NA other downstream 7905 24076521 ~ 24076721 (+)
G1965262 NA other downstream 291821 24360437 ~ 24360985 (+)
G1965263 NA other downstream 292472 24361088 ~ 24361482 (+)
G1965396 NA other downstream 497115 24565731 ~ 24567147 (+)
LOC110505697 ypel5 other downstream 720511 24788926 ~ 24791594 (+)

Expression


Co-expression Network