G1966618


Basic Information

Item Value
gene id G1966618
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 25459691 ~ 25460030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2248508
gtgtaatatgtcatattactgtcatctgatgaagattttccaaaggttagtgagcgatttattttttaatcctgcgtttgttgattgcatgttttggctattgaaatgagctgtgtctggtggtggttttacatatatatgtgctatgttttcgccgtaaaacattttagaaatctgacttgctggctagatgaacaagatgtttatctttcatttgagctattggacttgttaatgtgtggaggttaaatatttttaagaatatttttgcgttccatgcgccaccgtttcagctgaacgtgggagggttgattcccaattgggaaccagtatcgtagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2248508 True 340 lncRNA 0.37 1 25459691 25460030

Neighbor

gene id symbol gene type direction distance location
LOC110505701 LOC106611118 coding upstream 129907 25221998 ~ 25329784 (+)
LOC110504215 LOC106611119 coding upstream 273824 25118159 ~ 25185867 (+)
LOC110504214 LOC106601609 coding upstream 347754 25044862 ~ 25111937 (+)
LOC110505697 ypel5 coding upstream 668097 24788926 ~ 24791594 (+)
hs1bp3 hs1bp3 coding upstream 684270 24771814 ~ 24775421 (+)
LOC110505705 vdac2 coding downstream 115932 25575962 ~ 25576971 (+)
LOC110504216 NA coding downstream 539671 25999701 ~ 26089364 (+)
LOC110505710 spred1 coding downstream 977085 26437115 ~ 26520383 (+)
LOC110505712 LOC106611156 coding downstream 1067620 26527650 ~ 26534059 (+)
LOC110504217 LOC106601399 coding downstream 1122829 26582859 ~ 26623165 (+)
G1966174 NA non-coding upstream 365783 25093618 ~ 25093908 (+)
G1966120 NA non-coding upstream 410401 25049084 ~ 25049290 (+)
G1966065 NA non-coding upstream 463426 24995996 ~ 24996265 (+)
G1966025 NA non-coding upstream 526905 24932494 ~ 24932786 (+)
G1966635 NA non-coding downstream 10445 25470475 ~ 25470693 (+)
G1966693 NA non-coding downstream 54803 25514833 ~ 25515061 (+)
G1966742 NA non-coding downstream 134021 25594051 ~ 25678575 (+)
G1966865 NA non-coding downstream 220373 25680403 ~ 25680612 (+)
G1966876 NA non-coding downstream 230447 25690477 ~ 25690867 (+)
G1965396 NA other upstream 892544 24565731 ~ 24567147 (+)
G1965263 NA other upstream 1098209 24361088 ~ 24361482 (+)
G1965262 NA other upstream 1098706 24360437 ~ 24360985 (+)
G1964499 NA other upstream 1382970 24076521 ~ 24076721 (+)
G1967032 NA other downstream 371546 25831576 ~ 25833321 (+)
G1967965 NA other downstream 1194875 26654905 ~ 26655336 (+)
LOC110505721 ccdc88c other downstream 1528809 26988390 ~ 27099710 (+)
G1970001 NA other downstream 2953570 28413600 ~ 28413919 (+)
G1971104 NA other downstream 4014090 29474120 ~ 29478383 (+)

Expression


Co-expression Network