G1969009


Basic Information

Item Value
gene id G1969009
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27509270 ~ 27509499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2251113
aacgtaactacgtgttttatgtttttattatggtttgaacagaaggcgctgtgaattttgggctagctctgaaatatgtgattgttggcttctaaacgagttggaaaaagtgggtgtggtgtcagtttgtatcagtttggtgtcagaatgatatctaattgactgatggacggtgacttgctggctgacttttgtccatttgcaatatgtttaaacagtgaggtaccatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2251113 True 230 lncRNA 0.39 1 27509270 27509499

Neighbor

gene id symbol gene type direction distance location
LOC110505722 LOC106611215 coding upstream 407720 27099673 ~ 27101550 (+)
LOC110505721 ccdc88c coding upstream 409560 26988390 ~ 27099710 (+)
LOC110505720 LOC106611151 coding upstream 555663 26952140 ~ 26953607 (+)
LOC118944312 NA coding upstream 605233 26901777 ~ 26904037 (+)
LOC110504217 LOC106601399 coding upstream 886105 26582859 ~ 26623165 (+)
LOC110505726 psmc1 coding downstream 155498 27664997 ~ 27670414 (+)
calm1a LOC102293206 coding downstream 185349 27694848 ~ 27708762 (+)
LOC118944371 NA coding downstream 205601 27715016 ~ 27721101 (+)
LOC110505733 LOC106611173 coding downstream 350517 27860016 ~ 27985110 (+)
nfkbiab LOC106611175 coding downstream 496951 28006450 ~ 28009481 (+)
G1968989 NA non-coding upstream 13943 27495098 ~ 27495327 (+)
G1968985 NA non-coding upstream 16996 27492050 ~ 27492274 (+)
G1968975 NA non-coding upstream 26166 27482774 ~ 27483104 (+)
G1968957 NA non-coding upstream 38590 27470375 ~ 27470680 (+)
G1968923 NA non-coding upstream 62032 27447010 ~ 27447238 (+)
G1969044 NA non-coding downstream 38493 27547992 ~ 27555033 (+)
G1969130 NA non-coding downstream 108146 27617645 ~ 27617877 (+)
G1969131 NA non-coding downstream 109354 27618853 ~ 27619101 (+)
G1969177 NA non-coding downstream 181130 27690629 ~ 27691191 (+)
G1967965 NA other upstream 853934 26654905 ~ 26655336 (+)
G1967032 NA other upstream 1675949 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 2717676 24788926 ~ 24791594 (+)
G1965396 NA other upstream 2942123 24565731 ~ 24567147 (+)
G1970001 NA other downstream 904101 28413600 ~ 28413919 (+)
G1971104 NA other downstream 1964621 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 2814014 30092455 ~ 30330735 (+)
G1972242 NA other downstream 3120829 30630328 ~ 30632667 (+)
G1972244 NA other downstream 3127555 30637054 ~ 30655039 (+)

Expression


Co-expression Network