G1969044


Basic Information

Item Value
gene id G1969044
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27547992 ~ 27555033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2251149
aaggaagaagaatataaagagagctcgttcagctctttggggaggggctctttggtggcgcgacagtttgattgtgtgtgctgtgctgcagaagttttgtttgtgttcagcgtgtgtagtttatagagtatttaactcaatcatcggtgtaatcgctctaggtcgtggttgttttaGTTTGGAAccacgcccgttatggatcgcatggattagtagcaacattgttgcgaagctttaacatacaaaccaacaaaccatcggacagtcagacagtacacctgcacgcctgaagaccacagctaagatctctcttgttctctttctctttttctcttccctctatcgttccagtgctttaccctgaaacagactctctatttttccaatgcacttcccattgaagtgcattagagctggactattattgccctgcctgaagtatttggacattttagttaaaagggaggttgcttgccaattgtgtattgttatgtgaactgtattgagatgtactaatgacatgtggccgagaagactggacatttttaaggcctttgttgtgtcgatgaacaccccccacattcataccctctgcactcatctactagaaaataatacagattattgcaaatcctatgttgatgactgggttcgttcttgtatgaagttgctgttgaattgctctgccattattagtattagtattattgtatgaggtattcttgtttgggttacccctgtgctgtgatgtgggttttatatggtgtgtattctcttttctctccactggctatctggtaaacaggctacactctaggc
>TU2251151
aaggaagaagaatataaagagagctcgttcagctctttggggaggggctctttggtggcgcgacagtttgattgtgtgtgctgtgctgcagaagttttgtttgtgttcagcgtgtgtagtttatagagtatttaactcaatcatcggtgtaatcgctctaggtcgtggttgttttaGTTTGGAAccacgcccgttatggatcgcatggattagtagcaacattgttgcgaagctttaacatacaaaccaacaaaccatcggacagtcagacagtacacctgcacgcctgaagaccacagctaagatctctcttgttctctttctctttttctcttccctctatcgttccagtgctttaccctgaaacagactctctatttttccaatgcacttcccattgaagtgcattagagctggactattattgccctgcctgaagtatttggacattttagttaaaagggaggttgcttgccaattgtgtattgttatgtgaactgtattgagatgtactaatgacatgtggccgagaagactggacatttttaaggcctttgttgtgtcgatgaacaccccccacattcataccctctgcactcatctactagaaaataatacagattattgcaaatcctatgttgatgactgggttcgttcttgtatgaagttgctgttgaattgctctgccattattagtattagtattattgtatgaggtattcttgtttgggttacccctgtgctgtgatgtgggttttatatggtgtgtattctcttttctctccactggctatctggtaaacaggctacactctaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2251149 False 819 lncRNA 0.42 2 27547992 27555033
TU2251151 True 819 lncRNA 0.42 2 27547992 27555033

Neighbor

gene id symbol gene type direction distance location
LOC110505722 LOC106611215 coding upstream 446442 27099673 ~ 27101550 (+)
LOC110505721 ccdc88c coding upstream 448282 26988390 ~ 27099710 (+)
LOC110505720 LOC106611151 coding upstream 594385 26952140 ~ 26953607 (+)
LOC118944312 NA coding upstream 643955 26901777 ~ 26904037 (+)
LOC110504217 LOC106601399 coding upstream 924827 26582859 ~ 26623165 (+)
LOC110505726 psmc1 coding downstream 109964 27664997 ~ 27670414 (+)
calm1a LOC102293206 coding downstream 139815 27694848 ~ 27708762 (+)
LOC118944371 NA coding downstream 160067 27715016 ~ 27721101 (+)
LOC110505733 LOC106611173 coding downstream 304983 27860016 ~ 27985110 (+)
nfkbiab LOC106611175 coding downstream 451417 28006450 ~ 28009481 (+)
G1969009 NA non-coding upstream 38493 27509270 ~ 27509499 (+)
G1968989 NA non-coding upstream 52665 27495098 ~ 27495327 (+)
G1968985 NA non-coding upstream 55718 27492050 ~ 27492274 (+)
G1968975 NA non-coding upstream 64888 27482774 ~ 27483104 (+)
G1968957 NA non-coding upstream 77312 27470375 ~ 27470680 (+)
G1969130 NA non-coding downstream 62612 27617645 ~ 27617877 (+)
G1969131 NA non-coding downstream 63820 27618853 ~ 27619101 (+)
G1969177 NA non-coding downstream 135596 27690629 ~ 27691191 (+)
G1969198 NA non-coding downstream 172814 27727847 ~ 27814915 (+)
G1967965 NA other upstream 892656 26654905 ~ 26655336 (+)
G1967032 NA other upstream 1714671 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 2756398 24788926 ~ 24791594 (+)
G1965396 NA other upstream 2980845 24565731 ~ 24567147 (+)
G1970001 NA other downstream 858567 28413600 ~ 28413919 (+)
G1971104 NA other downstream 1919087 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 2768480 30092455 ~ 30330735 (+)
G1972242 NA other downstream 3075295 30630328 ~ 30632667 (+)
G1972244 NA other downstream 3082021 30637054 ~ 30655039 (+)

Expression


Co-expression Network