G1969177


Basic Information

Item Value
gene id G1969177
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27690629 ~ 27691191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2251295
GCCTTTTTTAGGAGGTCACTGGGGTAGATAGTATCCGAATCTGAGCCACTGCTTGCTGGAGAGGGTTCTCCACTCTTCTTCTTgtgcttcttctttttcttcttcttcttctccttctttttcttcttgttgGATTGGACATCATTCTTATCCTCCCTCTCTGGTATAACGTGTCTGCTTGTTTCTGCCGATTGTGTTTCGTTGGCTTTCTCAGTGGCTCgttggtgaagagagagagcgtcATCAGTG

Function

NR:

description
protein NRDE2 homolog isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2251295 True 249 lncRNA 0.46 2 27690629 27691191

Neighbor

gene id symbol gene type direction distance location
LOC110505726 psmc1 coding upstream 20215 27664997 ~ 27670414 (+)
LOC110505722 LOC106611215 coding upstream 589079 27099673 ~ 27101550 (+)
LOC110505721 ccdc88c coding upstream 590919 26988390 ~ 27099710 (+)
LOC110505720 LOC106611151 coding upstream 737022 26952140 ~ 26953607 (+)
LOC118944312 NA coding upstream 786592 26901777 ~ 26904037 (+)
calm1a LOC102293206 coding downstream 3657 27694848 ~ 27708762 (+)
LOC118944371 NA coding downstream 23909 27715016 ~ 27721101 (+)
LOC110505733 LOC106611173 coding downstream 168825 27860016 ~ 27985110 (+)
nfkbiab LOC106611175 coding downstream 315259 28006450 ~ 28009481 (+)
ppp2r3c LOC106611177 coding downstream 350410 28041601 ~ 28051126 (+)
G1969131 NA non-coding upstream 71528 27618853 ~ 27619101 (+)
G1969130 NA non-coding upstream 72752 27617645 ~ 27617877 (+)
G1969044 NA non-coding upstream 135596 27547992 ~ 27555033 (+)
G1969009 NA non-coding upstream 181130 27509270 ~ 27509499 (+)
G1968989 NA non-coding upstream 195302 27495098 ~ 27495327 (+)
G1969198 NA non-coding downstream 36656 27727847 ~ 27814915 (+)
G1969206 NA non-coding downstream 51757 27742948 ~ 27743489 (+)
G1969223 NA non-coding downstream 82188 27773379 ~ 27773755 (+)
G1969276 NA non-coding downstream 165091 27856282 ~ 27856719 (+)
G1967965 NA other upstream 1035293 26654905 ~ 26655336 (+)
G1967032 NA other upstream 1857308 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 2899035 24788926 ~ 24791594 (+)
G1965396 NA other upstream 3123482 24565731 ~ 24567147 (+)
G1970001 NA other downstream 722409 28413600 ~ 28413919 (+)
G1971104 NA other downstream 1782929 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 2632322 30092455 ~ 30330735 (+)
G1972242 NA other downstream 2939137 30630328 ~ 30632667 (+)
G1972244 NA other downstream 2945863 30637054 ~ 30655039 (+)

Expression


Co-expression Network