G1969276


Basic Information

Item Value
gene id G1969276
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 27856282 ~ 27856719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2251418
tcaggaatcgaacccactatcctggctctaccaactgagctacaggaccaTACTATGCATCGACGAGGCATGGTACCTTTCTGACTGCTGTCCAATCCTCCAGTATATCCAAGTCTTGTAACATGTAGACAATATATGGTCCTGACACAACAACTGGCTTCTTCTTTTTGTCTGGACTAAATGGATCTTTCCTCTTGTTCTTCCTTGACTGCAGCTCATCTTTCCAGAGCTCTGAGAAAAGAAGGGTCAATGAGGAAAGGGAATATTAAGACATGCCACTATCGGacagtttcct

Function

NR:

description
breast cancer metastasis-suppressor 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2251418 True 295 lncRNA 0.44 2 27856282 27856719

Neighbor

gene id symbol gene type direction distance location
LOC118944371 NA coding upstream 135181 27715016 ~ 27721101 (+)
calm1a LOC102293206 coding upstream 147520 27694848 ~ 27708762 (+)
LOC110505726 psmc1 coding upstream 185868 27664997 ~ 27670414 (+)
LOC110505722 LOC106611215 coding upstream 754732 27099673 ~ 27101550 (+)
LOC110505721 ccdc88c coding upstream 756572 26988390 ~ 27099710 (+)
LOC110505733 LOC106611173 coding downstream 3297 27860016 ~ 27985110 (+)
nfkbiab LOC106611175 coding downstream 149731 28006450 ~ 28009481 (+)
ppp2r3c LOC106611177 coding downstream 184882 28041601 ~ 28051126 (+)
LOC110505741 LOC106611180 coding downstream 201473 28058192 ~ 28065667 (+)
gemin2 LOC106611181 coding downstream 237786 28094505 ~ 28099259 (+)
G1969198 NA non-coding upstream 41367 27727847 ~ 27814915 (+)
G1969223 NA non-coding upstream 82527 27773379 ~ 27773755 (+)
G1969206 NA non-coding upstream 112793 27742948 ~ 27743489 (+)
G1969177 NA non-coding upstream 165091 27690629 ~ 27691191 (+)
G1969356 LOC106611176 non-coding downstream 155142 28011861 ~ 28014274 (+)
G1969369 NA non-coding downstream 180309 28037028 ~ 28037245 (+)
G1969263 NA non-coding downstream 209007 28065726 ~ 28066649 (+)
G1969384 NA non-coding downstream 259852 28116571 ~ 28116774 (+)
G1967965 NA other upstream 1200946 26654905 ~ 26655336 (+)
G1967032 NA other upstream 2022961 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 3064688 24788926 ~ 24791594 (+)
G1965396 NA other upstream 3289135 24565731 ~ 24567147 (+)
G1970001 NA other downstream 556881 28413600 ~ 28413919 (+)
G1971104 NA other downstream 1617401 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 2466794 30092455 ~ 30330735 (+)
G1972242 NA other downstream 2773609 30630328 ~ 30632667 (+)
G1972244 NA other downstream 2780335 30637054 ~ 30655039 (+)

Expression


Co-expression Network