G1969699 (LOC100380709)


Basic Information

Item Value
gene id G1969699
gene name LOC100380709
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28099921 ~ 28101436 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2251892
ctacattgagaccaatcactggccactttattaAGTGGATCATTAGTCACTTCATACAATGCACTTAAATGtatacatatcttacattactcatatcacactATTTTATACcctctattgcaccttgcctatgcctctcagccattgctcatccatatacttacatgtacataatctcattcacccctttagatggGGTAGTTGGGGGATTGTTTGATTACTTGTtgcatattactgcactgtcggaactagaagcacaagcatctcGTTACTCAAAttatcatctgctaaccatgtgacaagTAATTTGATTTGAGCAGAGGGAGTACCACTCATTTTTGCTGCAGCAGGAAAAGGGCCAGATCTATAGATTATTCTAACCTCAGAAGGGCCCCTTCAATGTCCCTCTGTTTAGCTGGGGGTCCTCCAGGTCCTCCACCAATGTCGGAGAGTCCACGTCTCAACAAGTTGATTCCTCGTCCCCTACCTCCAACACCTGGGATGGTTGGCCTTCTAGCTTGGCCAGGTCTCAATTCATTAGGATCCCGGCCAGTTAATTTACGGATATTATCGTCTACATTTTTCAAACTCTCTTTAGCTTTCTCAAGCTGGGCTTGCAAAGACCCTACTGCCACCGCCATCTTAGCTAACAAGCTTCCTCTCACAGGTCGCTCGGCGCAATGCATCATGGGGGGTGATAAACGCGTTTCACTACGTTGATTGACAACTCAAAGTAGTTACACGCACACGTCCATAAATTGTGGGTTACTGTTTTCCGAAATCCTCG

Function

NR:

description
PREDICTED: pinin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2251892 True 787 TUCP 0.44 3 28099921 28101436

Neighbor

gene id symbol gene type direction distance location
ctage5 LOC106611179 coding downstream 5686 28066100 ~ 28094235 (-)
fam177a1 LOC106611178 coding downstream 46404 28050988 ~ 28053517 (-)
LOC110504219 LOC106611176 coding downstream 59896 28014417 ~ 28040025 (-)
LOC110505736 LOC106611176 coding downstream 85608 28011861 ~ 28014313 (-)
LOC110505734 LOC106611217 coding downstream 110970 27985550 ~ 27988951 (-)
LOC110505745 LOC106611187 coding upstream 1012179 29113615 ~ 29122177 (-)
daam1a daam1 coding upstream 1033925 29135361 ~ 29206222 (-)
LOC110504220 LOC106601062 coding upstream 1115945 29217381 ~ 29221732 (-)
LOC110505749 NA coding upstream 1119287 29220723 ~ 29266875 (-)
ptp4a2a LOC106611191 coding upstream 1165616 29267052 ~ 29270880 (-)
G1969670 NA non-coding downstream 35615 28061625 ~ 28064306 (-)
G1969668 LOC106611180 non-coding downstream 39405 28059868 ~ 28060516 (-)
G1969695 NA non-coding downstream 41179 28058238 ~ 28058742 (-)
G1969694 NA non-coding downstream 42198 28057505 ~ 28057723 (-)
G1969692 NA non-coding downstream 45535 28054089 ~ 28054386 (-)
G1969703 NA non-coding upstream 7226 28108662 ~ 28109006 (-)
G1969709 LOC100194703 non-coding upstream 15424 28116860 ~ 28117211 (-)
G1969710 NA non-coding upstream 17048 28118484 ~ 28118699 (-)
G1969712 NA non-coding upstream 19376 28120812 ~ 28121067 (-)
G1969713 NA non-coding upstream 19854 28121290 ~ 28121604 (-)
LOC110505716 LOC106024658 other downstream 1334550 26716542 ~ 26765410 (-)
G1967882 NA other downstream 1561213 26535364 ~ 26538708 (-)
G1964728 NA other downstream 4671277 23425563 ~ 23428841 (-)
G1964592 LOC106569888 other downstream 4877418 23221973 ~ 23222503 (-)
G1964564 NA other downstream 4931808 23165032 ~ 23168113 (-)
G1969724 NA other upstream 42002 28143438 ~ 28143762 (-)
G1970606 NA other upstream 756504 28857940 ~ 28861987 (-)
G1971357 LOC106611199 other upstream 1421324 29522760 ~ 29525046 (-)
G1972454 NA other upstream 1880848 29982284 ~ 29982900 (-)
G1972746 npas3 other upstream 2406115 30507551 ~ 30508058 (-)

Expression


Co-expression Network