G1969408


Basic Information

Item Value
gene id G1969408
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28161309 ~ 28161695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2251556
tgggctatgtacaggtgcagtaatctgtgagctgctctgacagttggtgcttaaagctagtgagggagataagtgtttccagtttcagagatttttgtagttcgttccagcagagaactggaaagagaggcggccaaagaaagaattggttttgggggtgactagagagatatacctgctggagcgtgtgctacaggtgggagatgctatggtgaccagcgagctgagataaggggggactttacctagtagggtcttgtagatgacatggagccagtgggtttggcgacgagtatgaagcgagggccagccaacgagagcgtacaggtcacaatggtgggtagtatatggggctttggtgacaaaacggattgcactgtgatagac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2251556 True 387 lncRNA 0.50 1 28161309 28161695

Neighbor

gene id symbol gene type direction distance location
pnn LOC100380709 coding upstream 54933 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 62050 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 95643 28058192 ~ 28065667 (+)
ppp2r3c LOC106611177 coding upstream 110183 28041601 ~ 28051126 (+)
nfkbiab LOC106611175 coding upstream 151828 28006450 ~ 28009481 (+)
LOC110505743 LOC106611182 coding downstream 386853 28548548 ~ 28601863 (+)
LOC110504335 LOC106611218 coding downstream 939367 29101062 ~ 29106042 (+)
ccdc175 LOC106611218 coding downstream 944512 29106207 ~ 29114965 (+)
LOC110505748 gpr135 coding downstream 967348 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 1110307 29272002 ~ 29274608 (+)
G1969397 NA non-coding upstream 17733 28143198 ~ 28143576 (+)
G1969387 NA non-coding upstream 30607 28130482 ~ 28130702 (+)
G1969384 NA non-coding upstream 44535 28116571 ~ 28116774 (+)
G1969263 NA non-coding upstream 94660 28065726 ~ 28066649 (+)
G1969418 NA non-coding downstream 14162 28175857 ~ 28176402 (+)
G1969420 NA non-coding downstream 15906 28177601 ~ 28177905 (+)
G1969428 NA non-coding downstream 28850 28190545 ~ 28190864 (+)
G1969814 NA non-coding downstream 120996 28282691 ~ 28283744 (+)
G1969820 NA non-coding downstream 131296 28292991 ~ 28293287 (+)
LOC110505721 ccdc88c other upstream 1072993 26988390 ~ 27099710 (+)
G1967965 NA other upstream 1505973 26654905 ~ 26655336 (+)
G1967032 NA other upstream 2327988 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 3369715 24788926 ~ 24791594 (+)
G1965396 NA other upstream 3594162 24565731 ~ 24567147 (+)
G1970001 NA other downstream 251905 28413600 ~ 28413919 (+)
G1971104 NA other downstream 1312425 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 2161818 30092455 ~ 30330735 (+)
G1972242 NA other downstream 2468633 30630328 ~ 30632667 (+)
G1972244 NA other downstream 2475359 30637054 ~ 30655039 (+)

Expression


Co-expression Network