G1970178


Basic Information

Item Value
gene id G1970178
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28546309 ~ 28546648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2252387
tttgggtattgtgtgtaaattgatgagggggaaataaCAActcaatccattttaaaataaggctgtaaagtaacaaaatgtggaaaagtcaaggggtctgaatactttccgaatgcactgtaacatAGCCATGGCCATAATAACTTTACTTCAGATGTCGTTATTGGGTGCTATCATTCCATCTGTGTGGAGCGGTCTTGAGAGCATGTTGTATGGAAACTACACAACTCTGAGAGGTGGTGGTCTGTAATATATGATTATATGCTTGTGGGTAAAGCCCCCTTTCCTCTAATGATTGTCTAAGAATTATAATATAATTTCAGTGAGTCTGTATTTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2252387 True 340 lncRNA 0.37 1 28546309 28546648

Neighbor

gene id symbol gene type direction distance location
pnn LOC100380709 coding upstream 439933 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 447050 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 480643 28058192 ~ 28065667 (+)
ppp2r3c LOC106611177 coding upstream 495183 28041601 ~ 28051126 (+)
nfkbiab LOC106611175 coding upstream 536828 28006450 ~ 28009481 (+)
LOC110505743 LOC106611182 coding downstream 1900 28548548 ~ 28601863 (+)
LOC110504335 LOC106611218 coding downstream 554414 29101062 ~ 29106042 (+)
ccdc175 LOC106611218 coding downstream 559559 29106207 ~ 29114965 (+)
LOC110505748 gpr135 coding downstream 582395 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 725354 29272002 ~ 29274608 (+)
G1970176 NA non-coding upstream 2875 28543076 ~ 28543434 (+)
G1970171 NA non-coding upstream 4807 28540518 ~ 28541502 (+)
G1970155 NA non-coding upstream 19848 28526159 ~ 28526461 (+)
G1970153 NA non-coding upstream 22299 28523605 ~ 28524010 (+)
G1970139 NA non-coding upstream 32388 28513648 ~ 28513921 (+)
G1970179 NA non-coding downstream 278 28546926 ~ 28547274 (+)
G1970180 NA non-coding downstream 783 28547431 ~ 28547703 (+)
G1970181 NA non-coding downstream 1126 28547774 ~ 28548258 (+)
G1970209 NA non-coding downstream 33927 28580575 ~ 28581455 (+)
G1970001 NA other upstream 132390 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 1457993 26988390 ~ 27099710 (+)
G1967965 NA other upstream 1890973 26654905 ~ 26655336 (+)
G1967032 NA other upstream 2712988 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 3754715 24788926 ~ 24791594 (+)
G1971104 NA other downstream 927472 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1776865 30092455 ~ 30330735 (+)
G1972242 NA other downstream 2083680 30630328 ~ 30632667 (+)
G1972244 NA other downstream 2090406 30637054 ~ 30655039 (+)
G1972245 NA other downstream 2112756 30659404 ~ 30679995 (+)

Expression


Co-expression Network