G1970180


Basic Information

Item Value
gene id G1970180
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28547431 ~ 28547703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2252389
GGCGTCCCGAGGGCCGAGTTTGTCAAACACTGTTGCAGAGTTTCCCAAAGTTAGGAGATTACAGAATCTTAAACGTCATCGAACATTAGTTTACACTGGCGTGCTAATGAGGCATGGCAGCTGGGAACTATAGCCCTACATCATTCCAGTATAATTGTAATACAAATGCGACAAGAATTTGCTTCGAAAATGCAGAAACCTTTAAGATGTTAAACAGATATATTGAAGTTCTGTACTCGAGTCCCTTGATGCCATTGAAGAAGTTGGCGCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2252389 True 273 lncRNA 0.42 1 28547431 28547703

Neighbor

gene id symbol gene type direction distance location
pnn LOC100380709 coding upstream 441055 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 448172 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 481765 28058192 ~ 28065667 (+)
ppp2r3c LOC106611177 coding upstream 496305 28041601 ~ 28051126 (+)
nfkbiab LOC106611175 coding upstream 537950 28006450 ~ 28009481 (+)
LOC110505743 LOC106611182 coding downstream 845 28548548 ~ 28601863 (+)
LOC110504335 LOC106611218 coding downstream 553359 29101062 ~ 29106042 (+)
ccdc175 LOC106611218 coding downstream 558504 29106207 ~ 29114965 (+)
LOC110505748 gpr135 coding downstream 581340 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 724299 29272002 ~ 29274608 (+)
G1970179 NA non-coding upstream 157 28546926 ~ 28547274 (+)
G1970178 NA non-coding upstream 783 28546309 ~ 28546648 (+)
G1970176 NA non-coding upstream 3997 28543076 ~ 28543434 (+)
G1970171 NA non-coding upstream 5929 28540518 ~ 28541502 (+)
G1970155 NA non-coding upstream 20970 28526159 ~ 28526461 (+)
G1970181 NA non-coding downstream 71 28547774 ~ 28548258 (+)
G1970209 NA non-coding downstream 32872 28580575 ~ 28581455 (+)
G1970470 NA non-coding downstream 224932 28772635 ~ 28772950 (+)
G1970601 NA non-coding downstream 309378 28857081 ~ 28861957 (+)
G1970001 NA other upstream 133512 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 1459115 26988390 ~ 27099710 (+)
G1967965 NA other upstream 1892095 26654905 ~ 26655336 (+)
G1967032 NA other upstream 2714110 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 3755837 24788926 ~ 24791594 (+)
G1971104 NA other downstream 926417 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1775810 30092455 ~ 30330735 (+)
G1972242 NA other downstream 2082625 30630328 ~ 30632667 (+)
G1972244 NA other downstream 2089351 30637054 ~ 30655039 (+)
G1972245 NA other downstream 2111701 30659404 ~ 30679995 (+)

Expression


Co-expression Network