G1970470



Basic Information


Item Value
gene id G1970470
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28772635 ~ 28772950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2252688
gtatttcgcATGTCTTTTCCAGTGTGAACTTAattatgctccctctaattctctctctcctcggaggacctgagccctaggaccattttttgttatcctttatttaactaggcaagtcagttaagaacaaattcttatttacattgacggcctaggaacaaggggttaactgccttgttcagggacagaatggcagatttttaccttgtcagctcagtgattcgatctatcaacctttcagttactggcccaacgttctatccactaggctacctgctgccctgccgaccatgcctcaggactacctggcctgatg

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2252688 True 316 lncRNA 0.45 1 28772635 28772950

Neighbor


gene id symbol gene type direction distance location
LOC110505743 LOC106611182 coding upstream 170772 28548548 ~ 28601863 (+)
pnn LOC100380709 coding upstream 666259 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 673376 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 706969 28058192 ~ 28065667 (+)
ppp2r3c LOC106611177 coding upstream 721509 28041601 ~ 28051126 (+)
LOC110504335 LOC106611218 coding downstream 328112 29101062 ~ 29106042 (+)
ccdc175 LOC106611218 coding downstream 333257 29106207 ~ 29114965 (+)
LOC110505748 gpr135 coding downstream 356093 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 499052 29272002 ~ 29274608 (+)
adprs adprhl2 coding downstream 548384 29321334 ~ 29326173 (+)
G1970209 NA non-coding upstream 191180 28580575 ~ 28581455 (+)
G1970181 NA non-coding upstream 224377 28547774 ~ 28548258 (+)
G1970180 NA non-coding upstream 224932 28547431 ~ 28547703 (+)
G1970179 NA non-coding upstream 225361 28546926 ~ 28547274 (+)
G1970601 NA non-coding downstream 84131 28857081 ~ 28861957 (+)
G1970675 NA non-coding downstream 182988 28955938 ~ 28960970 (+)
G1970759 NA non-coding downstream 212037 28984987 ~ 28985249 (+)
G1970767 NA non-coding downstream 216569 28989519 ~ 28989724 (+)
G1970770 NA non-coding downstream 218841 28991791 ~ 28992034 (+)
G1970001 NA other upstream 358716 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 1684319 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2117299 26654905 ~ 26655336 (+)
G1967032 NA other upstream 2939314 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 3981041 24788926 ~ 24791594 (+)
G1971104 NA other downstream 701170 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1550563 30092455 ~ 30330735 (+)
G1972242 NA other downstream 1857378 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1864104 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1886454 30659404 ~ 30679995 (+)

Expression



Co-expression Network