G1970601


Basic Information

Item Value
gene id G1970601
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 28857081 ~ 28861957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2252821
tatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaaatgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactcacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcagctcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtatgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttctgcaatattcgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgctttcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2252821 True 1208 lncRNA 0.42 2 28857081 28861957

Neighbor

gene id symbol gene type direction distance location
LOC110505743 LOC106611182 coding upstream 255218 28548548 ~ 28601863 (+)
pnn LOC100380709 coding upstream 750705 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 757822 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 791415 28058192 ~ 28065667 (+)
ppp2r3c LOC106611177 coding upstream 805955 28041601 ~ 28051126 (+)
LOC110504335 LOC106611218 coding downstream 239105 29101062 ~ 29106042 (+)
ccdc175 LOC106611218 coding downstream 244250 29106207 ~ 29114965 (+)
LOC110505748 gpr135 coding downstream 267086 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 410045 29272002 ~ 29274608 (+)
adprs adprhl2 coding downstream 459377 29321334 ~ 29326173 (+)
G1970470 NA non-coding upstream 84131 28772635 ~ 28772950 (+)
G1970209 NA non-coding upstream 275626 28580575 ~ 28581455 (+)
G1970181 NA non-coding upstream 308823 28547774 ~ 28548258 (+)
G1970180 NA non-coding upstream 309378 28547431 ~ 28547703 (+)
G1970675 NA non-coding downstream 93981 28955938 ~ 28960970 (+)
G1970759 NA non-coding downstream 123030 28984987 ~ 28985249 (+)
G1970767 NA non-coding downstream 127562 28989519 ~ 28989724 (+)
G1970770 NA non-coding downstream 129834 28991791 ~ 28992034 (+)
G1970776 NA non-coding downstream 133435 28995392 ~ 28995601 (+)
G1970001 NA other upstream 443162 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 1768765 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2201745 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3023760 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 4065487 24788926 ~ 24791594 (+)
G1971104 NA other downstream 612163 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1461556 30092455 ~ 30330735 (+)
G1972242 NA other downstream 1768371 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1775097 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1797447 30659404 ~ 30679995 (+)

Expression


Co-expression Network