XLOC_038620 (kdm5a)


Basic Information

Item Value
gene id XLOC_038620
gene name kdm5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NW_003336534.1
NCBI id KN150487.1
chromosome length 123701
location 423 ~ 9079 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00076065
atatctggagctgtcggcgattaaaatcatgccgtgtgaaatgagttttgactgaaaataacatcagccatcgcctacagcccaatgagagagcagctttcacttgtgtgtgtgtgtgttatatgtgtgtgtgtgtgcagatgacGAGGCGTTCCTCCGTAAGCAGAAGCACCTGAAGGCCCAGGCGTTTGCTCTGAAGATGCGTCCGCGTAAAGAAGTGCTGGAGGTCAACTACGTGAGTCTGAGCTgcgtgatgagtgtgtgtgtagctgatctgatcacacacacacacacacacacacactcacacacacagcagtatAGATGAGCACTATTGATTATCCTGATGGTCCAGCGGCTGCACTTCTCTTctgagagtctgtgtgtgtgtataatgtgtgtgtgttgtgcagatCGACCTGTACATGTGTATGGCGTGTGGGCGGGGCGATGAGGAGGACCGCCTCCTGCTGTGTGACGGCTGTGATGACAGCTGCCACACCTTCTGCCTGATCCCGCCGCTGCAGGACGTCCCCCGCGGAGACTGGCGCTGCCCCAAGTGTGTGGCTGAGGAGTGCAGTAAGCCCCGTGAGGCGTTCGGGTTCGAGCAGGCGGTGCGCGAGTACACACTCCAGAGCTTCGGGGAGATGGCGGACCACTTCAAGTCTGACTACTTCAACATGCCTGTCCatatgGTGCCGACGGAGCTGGTGGAGAAGGAGTTCTGGCGTCTGGTCAGCAGTATTGACGAGGATGTGATCGTGGAGTACGGCGCTGACATCAGCTCTAAAGATGTGGGCAGCGGGTTCCCTGTGCGGGACGGCAGGAGGAAGCTGATCGGGGATGAGGAGgagtaCGCAGCGTCGGGCTGGAACCTGAACAACCTGCCAGTGCTGGAGCAGTGTGTGCTGACACACACCAGCGGGGACATCAGCGGGATGAAGGTGccctggctgtatgtgggcatgTGCTTCTCCTCCTTCTGCTGGCACATCGAGGACCACTGGAGCTCCTCCATCAACTACCTGCACTGGGGTGAACCCAAGACCTGGTACGGCGTCCCGGCCCGCGCCGCTGAGCAGCTGGAGTGTGTGATGAAGAAGGTGGCCCCGGAGCTGTTTGACTCCCAGCCAGACCTCCTGCACCAGCTGGTCACACTCATGAACCCCAACGTGCTGATGGAGCATGGCGTCCCGGTGTACCGGACCAATCAGTGCGCAGGAGAGTTCGTCATCACCTTCCCCAGAGCCTATCACAGCGGCTTCAACCAGGGCTACAACTTCGCTGAGGCCGTCAACTTCTGCACCGCCGACTGgCTTCCCATCGGCAGGCAGTGTGTGTCGCACTACCGGCGTCTGCAGCGCTACTGTGTGTTCTCGCATGAGGAGCTGGTGTGTAAGATGGCGGCGGACCCCGAGGGTCTGGATGTGGAGCTGGCGGCGGCCGCGGTGCGGGAGCTGGAGGAGCTGCTGGAGGAGGAGACGCGGCTGAGGAGCGCCCTGGAGGAGACGGGGGTGATCTCCTCAGTGCAGGAGGTGTTCGAGCTGCTGCCGGATGACGAGCGTCAGTGCTGGAGCTGTAAGACCACCTGTTTCCTGTCGGCAGTGACCTGCAGCTGCAGCCCGGAGCGGCTGGTGTGTCTGCGTCACGTGGGGGAGCTGTGCAGCTGCCCGCCCGCCAACAAGTGCCTGCGcttcAGGTACGCTCAGGAGGAGTTCCCCGCCATGCTGTATGGGGTGAAGACTCGTGCTCAGTCCTATGACACCTGGTCCCGCAGGGTGACGGAGGCGCTAGCGGCAGACAGCAGGAACAAGAGAGATGTGATCGAGCTGAAAGTGCTGCTGGAGGACGCGGAGGACCGCAGGTACCCAGAGAACAGCCTCCTGCGCAGCCTCAGGGACACACTGAAGGAGGCAGAGACCTGCTCCTCTGTAGCACAGctgctgctcacacacacacaccgacacagaaggGAGCGTGCGGATAGCGGCACACAGAAGCCGCGCAGTAAGCTGACGGTGGAGGAGCTGAAGGTGTTCGTGGAGCAGCTCTATAGACTGCCCTGCGTCATCAGCCAGGCCCGACAGGTCAAGGATCTGCTGGAGAGTGTGCTGTTGTTCCACGAGCGTGCGCAGGCAGCGCTGGCGGACCTGACGCCAGACTCCGGGAAGCTGCAGGCGCTGCTGGACCTGGGGTCAGGGCTGGACGTGGAGCTGCCGGAGCTGCCTCGGCTGCAGCAGGAGCTGACCCAGGCTCGCTGGCTGGACGAGGTGCGTGTAACACTTGCGGAACCGCAGAGGGTCACGCTGGAGCTGATGAAGCGCCTCATCGACTCGGGCGTAGGTCTGGCCCCGCACCCGGCCGTGGAGAAGGCCATGGCGGAGCTGCAGGAGCTGCTGACGGTGTCCGAGCACTGGGAGGAGCGTGCCAGAGCCTGTCTGCAGGCCCGGCCAAGACACAACCTGCTGACGCTGGAGAGCATCGTCACCGAGGCCAAGAACATCCCGGCACACCTGCCCAATGTGCTGACACTCAGAGACGCCCTGCACCGCGCCAAAGAGTGGAGCGCCAGGGTGGAGGCCATACAGAACGGCACTAACTACGCCTACCTGGAGCAGCTGGAGGGTCTGCTGGCGAGGGGCCGCTCTATCCCAGTACGGCTGGAGGCTCTGCCCCAGGTGGAGTCTCAGGTGGGCTCAGCAAGAGCCTGGAGAGAGAGGACCGCCCGCACCTTCCTGAAGAAGAACTCCACATACACACTGctgcagGTGCTGAGCCCCCGTGTGGACGTGGGTGTGTACGGCAGCAGTAAGAGCAAGCGTCGGCGTGTGAAGGAGCTGCTGGAGAAGGAGCGAGGGCTGGATCTGGAGGCGGTGTGCGAGCTGCAGGAGTGTGTGGAGGATGCGCGGGACCCCGCCGCAGTGGTGGCCGCCTTCAAGGCCCGCGAGCAGCAGGAGGTGCAGGCCGTGCACTCGTTACGGTCCGCCAACCTGGCCAAGATGGCGCTGGTGGAGCGTGTGGAGGAGGTGAAGTTCTGCCTGTGCCGCCGCTCTGCCTCCGGCTTCATGCTGCAGTGTGAGCTCTGCAAGGACTGGTTTCACGGCGCCTGCGTGCCCCTGCCCAAAGCCGGATCCCAGAAGAAGCTTGCGTCCGGCTGGCAGAGCGGCAGCAAGGAGAGCAAGTTCCTGTGCCCGCTGTGCCAGCGCTCACGCCGCCCGCGCCTGGAGACCATCCTGTCCctgctggtgtccctgcagaagCTGCCGGTGCGGCTGCCGGAGGGCGAGGCGCTGCAGTGCCTGACGGAGCGGGCCATGGGCTGGCAGGACCGCGCCCGACAGGCCCTGGCCACAGACGAGCTGTCCTCCGCCCTCGCCAAGCTGTCGGTGCTCAGCCAGCGCATGGTGGAGCTAGCGGCCCGCGAGAAGACCGAGAAGATCATCAACGCTGAGCTGCAGAAGGCCGCCGCTAACCCTGACCTGCAGGGCCACATCCAGACGTTCCAGCAGTCGGGCTTCAGCAGAGCAGCGTCTCCTCGGCCCTCGCTGGACTATGATGATGAGGAGACGGACTCAGACGAGGACATTCGAGAGACGTACGGTTATGACAGcaagGACGCAGGCGAGGTGAAGCCGTACCTATTCTGTGATGAGGAGATCCCAGTGAAGTCTGAGGAGGTGGTCAGTCACATGTGGCCCACCACACCCTCCTTCTGTGCGGAGCACGCCTACTCCTCCGCCTCCAAGAGCTGCCCGCAGAGTGAGTGCACACCTGAACACCTGAGTATATAGAGGTACACCTGAGTATATAGAGTCACCTGTACACCCGAGTATATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCCGTACACCTGAGTATGTATAGTCACCTGTACACCCGGTCACCCGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACATCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCCGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATGTAGAGTCACCCGTACACCTGAGTATATATAGTCACCTGTACACCCGAGTATATAGAGTCA
>TCONS_00076064
atatctggagctgtcggcgattaaaatcatgccgtgtgaaatgagttttgactgaaaataacatcagccatcgcctacagcccaatgagagagcagctttcacttgtgtgtgtgtgtgttatatgtgtgtgtgtgtgcagatgacGAGGCGTTCCTCCGTAAGCAGAAGCACCTGAAGGCCCAGGCGTTTGCTCTGAAGATGCGTCCGCGTAAAGAAGTGCTGGAGGTCAACTACatCGACCTGTACATGTGTATGGCGTGTGGGCGGGGCGATGAGGAGGACCGCCTCCTGCTGTGTGACGGCTGTGATGACAGCTGCCACACCTTCTGCCTGATCCCGCCGCTGCAGGACGTCCCCCGCGGAGACTGGCGCTGCCCCAAGTGTGTGGCTGAGGAGTGCAGTAAGCCCCGTGAGGCGTTCGGGTTCGAGCAGGCGGTGCGCGAGTACACACTCCAGAGCTTCGGGGAGATGGCGGACCACTTCAAGTCTGACTACTTCAACATGCCTGTCCatatgGTGCCGACGGAGCTGGTGGAGAAGGAGTTCTGGCGTCTGGTCAGCAGTATTGACGAGGATGTGATCGTGGAGTACGGCGCTGACATCAGCTCTAAAGATGTGGGCAGCGGGTTCCCTGTGCGGGACGGCAGGAGGAAGCTGATCGGGGATGAGGAGgagtaCGCAGCGTCGGGCTGGAACCTGAACAACCTGCCAGTGCTGGAGCAGTGTGTGCTGACACACACCAGCGGGGACATCAGCGGGATGAAGGTGccctggctgtatgtgggcatgTGCTTCTCCTCCTTCTGCTGGCACATCGAGGACCACTGGAGCTCCTCCATCAACTACCTGCACTGGGGTGAACCCAAGACCTGGTACGGCGTCCCGGCCCGCGCCGCTGAGCAGCTGGAGTGTGTGATGAAGAAGGTGGCCCCGGAGCTGTTTGACTCCCAGCCAGACCTCCTGCACCAGCTGGTCACACTCATGAACCCCAACGTGCTGATGGAGCATGGCGTCCCGGTGTACCGGACCAATCAGTGCGCAGGAGAGTTCGTCATCACCTTCCCCAGAGCCTATCACAGCGGCTTCAACCAGGGCTACAACTTCGCTGAGGCCGTCAACTTCTGCACCGCCGACTGgCTTCCCATCGGCAGGCAGTGTGTGTCGCACTACCGGCGTCTGCAGCGCTACTGTGTGTTCTCGCATGAGGAGCTGGTGTGTAAGATGGCGGCGGACCCCGAGGGTCTGGATGTGGAGCTGGCGGCGGCCGCGGTGCGGGAGCTGGAGGAGCTGCTGGAGGAGGAGACGCGGCTGAGGAGCGCCCTGGAGGAGACGGGGGTGATCTCCTCAGTGCAGGAGGTGTTCGAGCTGCTGCCGGATGACGAGCGTCAGTGCTGGAGCTGTAAGACCACCTGTTTCCTGTCGGCAGTGACCTGCAGCTGCAGCCCGGAGCGGCTGGTGTGTCTGCGTCACGTGGGGGAGCTGTGCAGCTGCCCGCCCGCCAACAAGTGCCTGCGcttcAGGTACGCTCAGGAGGAGTTCCCCGCCATGCTGTATGGGGTGAAGACTCGTGCTCAGTCCTATGACACCTGGTCCCGCAGGGTGACGGAGGCGCTAGCGGCAGACAGCAGGAACAAGAGAGATGTGATCGAGCTGAAAGTGCTGCTGGAGGACGCGGAGGACCGCAGGTACCCAGAGAACAGCCTCCTGCGCAGCCTCAGGGACACACTGAAGGAGGCAGAGACCTGCTCCTCTGTAGCACAGctgctgctcacacacacacaccgacacagaaggGAGCGTGCGGATAGCGGCACACAGAAGCCGCGCAGTAAGCTGACGGTGGAGGAGCTGAAGGTGTTCGTGGAGCAGCTCTATAGACTGCCCTGCGTCATCAGCCAGGCCCGACAGGTCAAGGATCTGCTGGAGAGTGTGCTGTTGTTCCACGAGCGTGCGCAGGCAGCGCTGGCGGACCTGACGCCAGACTCCGGGAAGCTGCAGGCGCTGCTGGACCTGGGGTCAGGGCTGGACGTGGAGCTGCCGGAGCTGCCTCGGCTGCAGCAGGAGCTGACCCAGGCTCGCTGGCTGGACGAGGTGCGTGTAACACTTGCGGAACCGCAGAGGGTCACGCTGGAGCTGATGAAGCGCCTCATCGACTCGGGCGTAGGTCTGGCCCCGCACCCGGCCGTGGAGAAGGCCATGGCGGAGCTGCAGGAGCTGCTGACGGTGTCCGAGCACTGGGAGGAGCGTGCCAGAGCCTGTCTGCAGGCCCGGCCAAGACACAACCTGCTGACGCTGGAGAGCATCGTCACCGAGGCCAAGAACATCCCGGCACACCTGCCCAATGTGCTGACACTCAGAGACGCCCTGCACCGCGCCAAAGAGTGGAGCGCCAGGGTGGAGGCCATACAGAACGGCACTAACTACGCCTACCTGGAGCAGCTGGAGGGTCTGCTGGCGAGGGGCCGCTCTATCCCAGTACGGCTGGAGGCTCTGCCCCAGGTGGAGTCTCAGGTGGGCTCAGCAAGAGCCTGGAGAGAGAGGACCGCCCGCACCTTCCTGAAGAAGAACTCCACATACACACTGctgcagGTGCTGAGCCCCCGTGTGGACGTGGGTGTGTACGGCAGCAGTAAGAGCAAGCGTCGGCGTGTGAAGGAGCTGCTGGAGAAGGAGCGAGGGCTGGATCTGGAGGCGGTGTGCGAGCTGCAGGAGTGTGTGGAGGATGCGCGGGACCCCGCCGCAGTGGTGGCCGCCTTCAAGGCCCGCGAGCAGCAGGAGGTGCAGGCCGTGCACTCGTTACGGTCCGCCAACCTGGCCAAGATGGCGCTGGTGGAGCGTGTGGAGGAGGTGAAGTTCTGCCTGTGCCGCCGCTCTGCCTCCGGCTTCATGCTGCAGTGTGAGCTCTGCAAGGACTGGTTTCACGGCGCCTGCGTGCCCCTGCCCAAAGCCGGATCCCAGAAGAAGCTTGCGTCCGGCTGGCAGAGCGGCAGCAAGGAGAGCAAGTTCCTGTGCCCGCTGTGCCAGCGCTCACGCCGCCCGCGCCTGGAGACCATCCTGTCCctgctggtgtccctgcagaagCTGCCGGTGCGGCTGCCGGAGGGCGAGGCGCTGCAGTGCCTGACGGAGCGGGCCATGGGCTGGCAGGACCGCGCCCGACAGGCCCTGGCCACAGACGAGCTGTCCTCCGCCCTCGCCAAGCTGTCGGTGCTCAGCCAGCGCATGGTGGAGCTAGCGGCCCGCGAGAAGACCGAGAAGATCATCAACGCTGAGCTGCAGAAGGCCGCCGCTAACCCTGACCTGCAGGGCCACATCCAGACGTTCCAGCAGTCGGGCTTCAGCAGAGCAGCGTCTCCTCGGCCCTCGCTGGACTATGATGATGAGGAGACGGACTCAGACGAGGACATTCGAGAGACGTACGGTTATGACAGcaagGACGCAGGCGAGGTGAAGCCGTACCTATTCTGTGATGAGGAGATCCCAGTGAAGTCTGAGGAGGTGGTCAGTCACATGTGGCCCACCACACCCTCCTTCTGTGCGGAGCACGCCTACTCCTCCGCCTCCAAGAGCTGCCCGCAGAGTGAGTGCACACCTGAACACCTGAGTATATAGAGGTACACCTGAGTATATAGAGTCACCTGTACACCCGAGTATATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCCGTACACCTGAGTATGTATAGTCACCTGTACACCCGGTCACCCGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACATCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCCGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATGTAGAGTCACCCGTACACCTGAGTATATATAGTCACCTGTACACCCGAGTATATAGAGTCA

Function

symbol description
kdm5a Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ankylosing spondylitis. Orthologous to human KDM5A (lysine demethylase 5A).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-150114-1 Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ankylosing spondylitis. Orthologous to human KDM5A (lysine demethylase 5A).

Ensembl:

ensembl_id ENSDARG00000104567

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00076065 False 4224 mRNA 0.60 17 423 9079
TCONS_00076064 True 4046 mRNA 0.61 18 423 9079

Neighbor

gene id symbol gene type direction distance location
XLOC_038621 CABZ01074304.1 coding downstream 6376 15455 ~ 17143 (+)
XLOC_038622 CABZ01074307.2 coding downstream 14359 23438 ~ 31563 (+)
XLOC_038623 CABZ01074307.1 coding downstream 22623 31702 ~ 60475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000425_00014502_00032233 KDM5A coding CI01000425 null 14347 ~ 32825 (-)
bowfin (Amia calva) AMCG00006849 kdm5a coding CM030134.1 CM030134.1 22689184 ~ 22714844 (+)