G1970843


Basic Information

Item Value
gene id G1970843
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29050463 ~ 29050675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2253076
CAACAACacactcttttttttctctgaaCAAATCAAAGGTCAGTGCATTCTATCTttgtttccatctctctctctctctctctctctctctctctctctctctctctctctctctctctcattttataAAGGACCAGACTCCTCTGGACACAGTATTTACTCCTCTTGTACTGCTGCAGCTTTTATTTGTCCCGCTACAAAGCGAAACACACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2253076 True 213 lncRNA 0.42 1 29050463 29050675

Neighbor

gene id symbol gene type direction distance location
LOC110505743 LOC106611182 coding upstream 448600 28548548 ~ 28601863 (+)
pnn LOC100380709 coding upstream 944087 28099654 ~ 28106376 (+)
gemin2 LOC106611181 coding upstream 951204 28094505 ~ 28099259 (+)
LOC110505741 LOC106611180 coding upstream 984797 28058192 ~ 28065667 (+)
ppp2r3c LOC106611177 coding upstream 999337 28041601 ~ 28051126 (+)
LOC110504335 LOC106611218 coding downstream 50387 29101062 ~ 29106042 (+)
ccdc175 LOC106611218 coding downstream 55532 29106207 ~ 29114965 (+)
LOC110505748 gpr135 coding downstream 78368 29129043 ~ 29136833 (+)
gjb9a LOC106611221 coding downstream 221327 29272002 ~ 29274608 (+)
adprs adprhl2 coding downstream 270659 29321334 ~ 29326173 (+)
G1970817 NA non-coding upstream 18625 29031426 ~ 29031838 (+)
G1970793 NA non-coding upstream 43849 29006365 ~ 29006614 (+)
G1970789 NA non-coding upstream 45712 29004390 ~ 29004751 (+)
G1970783 NA non-coding upstream 49970 28999776 ~ 29000493 (+)
G1970776 NA non-coding upstream 54862 28995392 ~ 28995601 (+)
G1970898 NA non-coding downstream 93192 29143867 ~ 29144796 (+)
G1970921 NA non-coding downstream 125729 29176404 ~ 29176711 (+)
G1971035 NA non-coding downstream 162035 29212710 ~ 29212925 (+)
G1970001 NA other upstream 636544 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 1962147 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2395127 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3217142 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 4258869 24788926 ~ 24791594 (+)
G1971104 NA other downstream 423445 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1272838 30092455 ~ 30330735 (+)
G1972242 NA other downstream 1579653 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1586379 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1608729 30659404 ~ 30679995 (+)

Expression


Co-expression Network