G1971073


Basic Information

Item Value
gene id G1971073
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29283882 ~ 29289836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2253338
aaaatgtggaaacagtaAAAGgttgtgaatacattctgaaggctctgtagaaTAGATATTCTCAATAATAATCTTTAGCAGAATCAATCAATTATGCAATAACCACGTCTGGTGTGTTTGAAGCACCCCAAAGCCACAATATTCATGATTATGAGAGATCCTCATTGCATGAACATGTGAGGTGTATTTTTTTATGTGGTGCCCTGTCAAACCTACACTGGAGAAGTCTCCTCCCTCAAGATGCTCAAACAAAAGGTTGATGTCATCTCTGTCATTCAATGCGCCAGAGCTCAATGTCAACTGTTCCACTTATTTGGGTTGGGGTAACAATGATTCCTTTTTCAAACAAAAAGACACAAAAAAAAGAACAGTGTCACATATGAGTGAGTGACAGTAATGGTATTGAGATGTTAGTCACCCAGACAAACACTGTGGCTGTGATGAAAGGCCATTCGTATACTATTAGCCTGGGTACTAGTCTGTTCAATGAAAAGGTGCAAAGCTCGCTCAACattaaaaatgcattgttttattcaaGCAAGGTTTAAAGATGAGTGTTTTCCAGCCTTCAATTCTTTCCATACTAGTCTGTTCGTGCAATCATgcCACAAACAAACCCAATGAACTCCTactcagacacaaacacaacagtttgtctgtcagtctcagataATGTGGGTATTGATCCTCATGTGAATTATAGCTGACATACAAATTAACTATTAATTATGACAGCCCCCACCCCATTATCACATCCACTGCCACCTCACTGGCCTGGTTCACAATGATCTAATTAATTTTGCctgaaatagacagacagagcccTACATTTCTGCAATAGAGGGGTGTTGCCCTTGGATGTATTCACTTGcagtggtaaaataaaaatgtagaaaaataaaTGTGGGGCTTACTTTTCCCAACAGACAAAATGCAGGTGACACAGAATCCCCATTAGAGCCACCAAGTCAAGGTATTTATTTGCACATTTATGCATTTCAACAAGTTGTACATAAAAGCTTTACAATAGCTCCCTTTATGTGTATGCATCACTTAGTATTATACACCATCAATAACCAGGCAAGGTAGGCTACTGTAGATCAATAGTTAACTGCAAGAAATCTTCATAGCTTTACAATGCAACATTTATTTCAGAGCACTTTATTATAtatttggcaaaaaaaaaatatttaacctttatttaactaggcaaggcagttaagaacaaattcttatttacaatgacggcctactccggccaagcCCTATCCCGGGCGATGCTGGGAAATGTACCAATGATAAAATACACCACATTCACTCATGATTTTCATTTATACAAGACCCAATCAACACTTTTCATAAATTAAATATACTGAAAAACAGTAACACCtgatctttccatgacaaagactgaccaggtgaatccaggataaatctatgatcccttatgggtgtcacttgttaaattaagccatgagacaattgagacatggattgtgtatgtgtgccattcagagactgaatgggcaagacaaataaTCAAGAACTGCATCGCTGCtcggtttttcacactcaacagtttcccatgtgtatcaagaatggtctaccccccaaaggacatccagccaacttgacacaactgtgggaagcaatggaATCAACACGGGCccgcatccctgtggaatgctttcgacaccttgtaggtCAAAATTGGatgcgcaactcaatattaggaaggtgtttctaatgttttgtacactcagtgtatatagcaAATGTGTAGGCATGTCTAACAATCAGATGAAACATAAATACTGTAAATGAAAATCCAACAGTATCTCAATATCAATCAACTTGACAAATTATATGTAACTTATTTGATGCAACAGAAAATACATTAAATAAAGCAACTGTAGAGGGAGAATTCTTAAATTTTGCTCATATGGTAATAGAAATCTATGAAGAATGAAGCTCTTATTAAGGTAGTATTTACTATGACTATCTTTACTTAAATGAAGCATGAATACCAAAACGTATGACTGAATCAATTGGTTATGGTGTTTAAAACCTTAAAAACGAATTTATAATTGAATTAAAAGAATGTCAAACtttgactgtgtcccaaatggcaccctattcccaatgggtcctggtcaaaagcagtgaattatatagggaatagggtgccatgtgagacgcagtcagtgtgtctctcctctcacacctCTGTGTGGGTTGAGGAGTatgaagaggatgaagaggaagatgaagaggatGACGTGTCTTTTTTACTCGTCTGACGAGTGGAACCTTCAGCAGCCCTGAACTGCCAGGTAACCTTCCTCTGTTGATCGGTTACAGGGACTGTAATTTCCTCTGTCACTGGCTCTGTCACTGGTTTCACTTCCTCACAGAATAGATCAGACAACACTTCCTGCTCTAATTCCTCCCACAGATCCCATGTCGGTTGTTTGATTGGTTTAGACTTAGAGCCGGACTCGGACTCATCAGAATCCCAGTCACTGTCTCCAACCATGGAGCCGAGCACAAAGTCCACTCCGGACCCGCTGTCATCGGAGGAGTCGGACCCCTTGGAACAACGAATAAAGGAAGAGTGGCCTTCTGTGGCAAGCAGATGACACTCAGGACCCGCCAGATACACAAAGCTATCTGTTGAGAGGAAGTCACTCTCCTCAACGTTGGGGCAGAGGGGTCTGGAAAGGGAGGTTGGGGGTGTAGACtcagtggggagagaggggggctcCTCCTGTGCCAGTGAGACATCAGGGAGCACAGACACAGCCAGGTATACAAAACTATCTGTAGTGGCAAATGGATCCAGGTCACTGCTGTCCAGGCCCGACTTCTTCCGTGGTATCTCATGTCTGGAGGGGGACAAGGGGAGTGGGGAGTCAGTGCCAGATATGATCTTAACACTCTTGTTCCTCGGTTTCAATTCTGCCTGGTTTAAAGGGGTGAAACCATCATGTAGATCTGAGTTATCAGGCCCTTCATTGTTGGTGGATTGCATGTCACCCATTTCAGTGTCTTTCATCAAAGGTGCTTCTTCCTCAATTCCATATCCCTCACAGTGAGAGGAGCTCTTTAAGAGTGATGGGTAGCACCACTGAAGCTCGgtgctctcctccctcccccagtcTTTAAATGCAACCTCGTCTTTATCCTCGTCCAGAGATGTGTTGCTCCCCAAGTCTGACTCAGTCAAGGGTCTGTCACTACCATCTGAGGCGTTGTCTTCCTGGCTTGTCTGACTGGGGTTCGACATGAAGACTCCACTTGAGTCTGACTCCAAGGTCAGGTTGAAATCAGGCGAACCATCTTCCTTGACATTTTTTGTCCCTGTTGAGCACCCCATGGTAAGGAGTTCCAGGCTGGGTTGGGTACTGATCTGCTCAGGTTCAGAGACACTTCCAGAAACAACAGACTGCTCTGCTGTGAGCTGTGAAGCTTTCTTTCTCAGAGAATCTGTCAGACATTGTTCTGCTACAAGCTCACTTTCTACATCCTTGGCCCTTCTCTCCAGCTCCAGGAGAGAGAGTTCAGAAGCAGCACTAGAGGGTGGGTGAGATCCTCCAAACCCAGAAGGGGGTTTGAGCAGAGGCCAGTGCCTCAGTGAGCCAGTGTAAGACTCTGCATCCCCCCAGCCTTCGTCCCACAGTGTGTTCACCATACCGAGCACTGTGtcccactcctccacctcctccccctcagcACCGCCACCTCTTGCTCCACTCTCCTGCTCCTTGCTTTCTGGATCTCCCTCCTTTATACTTGACTCAGTGCCAATGCTGCTTTTACATTCttgctcctcccctccttccccttccTTCTCTGGTTGTTGGAGAGTTTTTTTCGCAGAGAAGACCCTCCAATTTTCCAAGTGTTGCTCCTTCAAGGAGTAACCCACCCTACCCATCAACCCTACCAATTTACCCTGGTGCTCAGAGAAAGGGGTGAGGTGGggaagattttttttctccatggCACTAAGCACCACCAGGGAGGGCAGAGGGGGAAGGATAGGAAAGTTATGGATTGCACCACCTTGTCTAACAGTTCTCTTCCTTACAATCAGCCTGCGAGGCCAGGTAGATTCCATAGGCTGGGGGCTCACAGCACGAGCAGGGGCAGGTCCTGGGGAAATCTGATCGAGCAAGAGGGGGGTAGTGTCACGGGGTGGCTCTGGGGAGAAGGGAGAATCATTGTCAATTTCTGAGTCCAGTGCCTTCGTTCTCGGCGCAAAACCAAAAACCCCAACATTCTCCTCTTGAGACATAGAGCCCACTGAGTGGGATACCACCCTTTTTTTCTCAATCTCTCCCCCTTTCACAttctttctttctgtttctctgtctcttcctcctatCGTTCTGAGATCCTCTTGAACACATTGGAGGGCCGTGACAGAGAGCTGGGCGAGAGGGGGTTTGGGAGGGGGGTGACGAGGCTGAGAGGGGGGTGATTCTTCAAAGACTAAGCTCTGATACTGAAACGGAAGGGGTTTGGCTGGGGAGCAGAACACAGGGGTGTGACAGCCAGAGGAAAGGGGTGACCCAGAGAAGGGTGAGATGAGAGGGGAGGTCATGCTGTGTTGTAGGTAGAGAGGATTTAAGAAATTCTTCTCCATTACATCTCCAGATGAGAGTTCTAGATGCTCAAGATGTTTAGGGGGTGTCAGGACTTTCCAGGAGCGCTGGCCGTTGTCCCCTCTCTTGCTGCTGTCATGCTGGTGTTGATGTCTCTTGCCACTGGAGGAGGAATTTCCCCCAGGGGCTGAAATCAAGGAGACACTGGGGGACACTGACCTCCCTGCGGAACGGCTGCTCTGGCCAGCTTCAACCAGCTTCAGCTGGTCAAATATCACCCTTTCGTCTAGCCTCCTACCCATGGAAGGTATGGGAGTTGTAGATCGTGCCTCAAACGTGATCATGTCCCCGCAGGCACCTGCCCCTACCCCTTGGTTGCCGTTGctggagaagttgttgtcctggcctcCCCTAGAGGTTATGGTGCTCTGAGCAGAGCCATGGTCAATCTGTTCATTGATACACATGGTGTCGTAGATGGAGCGCTGGGGGATGTAACCGTCCTCATTGTAGCCATCCCCGTCCACACTCTTCTCCAGGCAGCAGGGACACTGCCTGAAGCAACACGGTCGACTAAGAGGCTTCCCCATGGTGTTCTATCCACCACCAGCAAAAATGACTGTCAGTAAATGTTCCAAAAAGAGTAGTCTAAAAAGTGATGGTAATTGAAATATACTAGATATAAAAGAAGTGCAGTGAGACAACTTAAAAATGAGTATGATGCATGTCAGGTCATTCCTTTTCATCATGCAATAGTTAATTACAAATAATATTCAGATTGAGTGCCATCTGTAAAGTCTATTAAAACTGCCTCTCTCTCCGCTCAATAATACCAGTACAGGAGCTTGGAGAAATTATTTTTGTCATAGAGGCATATTCAAGAACAATTTTGCTCGCTTGCTCTGACAGAACTGCAGCCAACAACACAAAAACAGATTCACAAAGGTGTTAAATAGAGTTGCAGCTTCAAAAAAATAACTCACAACTTCAACATGATGCTGCATAActcactgttctctctgtgttggtTCATTCAGAACCTCCAAAGCATTTCCCTTTGTCTATCTCCGCATCACCTTCTCCTCATGCTAGTCTCTGCTGTCATCAATTTCAACTGTCCCCATCAATAAATGAGTCAAAAACTTGTCATTGCCATGGCAGCTGATTAATCCATCTCGTTGCTTGCGCTCCAGAATACATCATTTCTGAAATGAAGAAACTAAAGGTTTAAGAAACCATGTAAATCATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2253338 True 5856 lncRNA 0.45 3 29283882 29289836

Neighbor

gene id symbol gene type direction distance location
gjb9a LOC106611221 coding upstream 9274 29272002 ~ 29274608 (+)
LOC110505748 gpr135 coding upstream 150957 29129043 ~ 29136833 (+)
ccdc175 LOC106611218 coding upstream 170218 29106207 ~ 29114965 (+)
LOC110504335 LOC106611218 coding upstream 177840 29101062 ~ 29106042 (+)
LOC110505743 LOC106611182 coding upstream 682019 28548548 ~ 28601863 (+)
adprs adprhl2 coding downstream 31498 29321334 ~ 29326173 (+)
LOC110505757 cinp coding downstream 36438 29326274 ~ 29334901 (+)
LOC110505758 tecpr2 coding downstream 52615 29342451 ~ 29377849 (+)
LOC110505760 rcor1 coding downstream 91877 29381713 ~ 29392098 (+)
LOC110505762 traf3 coding downstream 102720 29392556 ~ 29405607 (+)
G1971071 NA non-coding upstream 1795 29281884 ~ 29282087 (+)
G1971066 NA non-coding upstream 7151 29276108 ~ 29276731 (+)
G1971041 NA non-coding upstream 62115 29221113 ~ 29221767 (+)
G1971043 NA non-coding upstream 66761 29216815 ~ 29217121 (+)
G1971035 NA non-coding upstream 70957 29212710 ~ 29212925 (+)
G1971088 LOC106611192 non-coding downstream 20317 29310153 ~ 29310649 (+)
G1971091 LOC100194703 non-coding downstream 24045 29313881 ~ 29314303 (+)
G1971354 NA non-coding downstream 232486 29522322 ~ 29522574 (+)
G1971365 NA non-coding downstream 240338 29530174 ~ 29530374 (+)
G1971376 NA non-coding downstream 247433 29537269 ~ 29537535 (+)
G1970001 NA other upstream 869963 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2195566 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2628546 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3450561 25831576 ~ 25833321 (+)
LOC110505697 ypel5 other upstream 4492288 24788926 ~ 24791594 (+)
G1971104 NA other downstream 184284 29474120 ~ 29478383 (+)
LOC110505775 LOC106611224 other downstream 1033677 30092455 ~ 30330735 (+)
G1972242 NA other downstream 1340492 30630328 ~ 30632667 (+)
G1972244 NA other downstream 1347218 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1369568 30659404 ~ 30679995 (+)

Expression


Co-expression Network