G1971357 (LOC106611199)


Basic Information

Item Value
gene id G1971357
gene name LOC106611199
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29522760 ~ 29525046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2253707
aTTGACAGTTTTAGCGACAAAACACGGGAATAAGACCACAATATCACAACCATGAAATTTAAAGACAACATAAACAATCACTCCATATTTGCATGAGGCGTTTGCTCAACACGGGTTACACGTTCGCAAAGTTAACCTATAATTACAATAGGTATTGACAGTTCACTAAGTACAAAAGGATGTGGTCTGGTGGTGACCACATTCAGTAAAATATGCACAACACAAGCTAAAGGCATTCATTCATTTTGTCCCCTTCTGAATCTGTTCTGGTGCTGAATACTGAAATTCTCAAGTATTTTTTCTAAACCCATTCTTTGGTCTATAAAGTATAACAGTATTGTGAAAATGTAATATATAAATGAATGTCATAAAGTACTAGCCTAATTTGTTCATAATGGGAGAggacaaaataacaaagagccaTGGGTTGGTATGGTTATTCTGCAttttaaaaacacatttatttcaaaaggaaaaataatacaaattagtgttatttttttgttgttgcaaaaaTCATATTCCACCAGTGCACTCATGATACGTGATAATACTGCAAACATGGAGACTGGTGGTTGATGTGATGGTATTAGATATTCTTAATATTAAAATTAGGCAAATCTGCAGACTATTTAAATACACATTCTAAGGTAATGCCTCTCAGTCCAAAACCTACATGTACTCTTATTTTTTTGTTATCACATTGCACGTTGCTGACGGTGGAATAATAAACAACTCCCCGAAACATGACATATGCCTACGTACACAGAAATAAATGCAGAATATTATTAAAAAATACCTGGACTTCAGTTCTGGCTGCTTTCATTTTGTTTTTCTCTTTGTTTACTTTATATTTTCTTTATATGTTTTAGAATGTAAACGGGTGTAAAATGTTCACTTACAGTCTTGCTCCCGAGGGATGTTTTGTTAGTGTATAAGTGGATTTGAAGTTGACCCTTGATTATGATGTGTGAAGTAATCAGAAAGTCCTCCAGAAAGTCCTGAAGAGAAACTTGGTAGCGAAGACCTTAAAGACTCACAGGGAAGAGATGAGGGCGCCTGCGGGGAGGAGGATGCAACCCTGGCCGCCATCGAAGCGCTGCTCTGGGAGGTCATTGATGGATGCGGGACATGGGGGAAAAAGTAACTTGTCTGTCCTGCAAGGAGGTTTATGGACGAACATGGGTTTAAAGAGTATGTCCCGGAGCAGGGCACTGATAGACCACATGGCACAGAGGCCGCCAATGCCGCTGCCGTTAGGTGATGAGTGGCATAGGGAATGTCTCCATTCACAAGTCTGTCAACACTTAGGCCATTGGAAGAAGGGAAAGAATGGTTGTTCCCCAAACTGTTTTGAGTCAACATTGTACTGTAGGACATAGGATGACTAGGGTAAGCCGATGATGTCCCATTGTAGCTCAATGCGCTGCTGGCCCTCGGATGGTGAAGCGAAAGAAATGGTGACATTGGCCAATATAGAGAGCCGGCTCTATCCATAAAGGTCAACCCAGAGGAAGTAAGACGAGCACCCCGCTTGAAAGCCAACTTTGCCCTGGATGTGGTCGATCTCCGGCGAAGTTTGCCTGTTGTCCCACCGATAAACACATCGTCACTCGAGGGGTCAAGCATCCAGTAGTTCCCCTTACCCGGGTCATCATAGTGCCGCGGGACtttaacaaaacatttgtttaGGCTAAGGTTATGCCTGATGGAATTCTGCCAACCCTGCTTGTTCTCCCGGTAATAGGGGAAATTCTTCATAATGAATTCGTAAATACCGTTCAGAGTTAGTCGTTTCTCCGGACTCTGCCGAATAGCCATCATAATTAAAGCATTATAGCTGAATGGTGGTTTCTCGTACTTGCCGTTTTTCTTTTCACCGTCTTTCCcaccgctctctccctctttgctatccttcttctcttcctgttTTTCCTTTTCATCCATGCAAGTGGTTTCATTGGACGAATTGTCACTTTTGGTGCAAATGTTCTCTGACTTTGCATCTTGCACTGAAGAAGGTAAAGGGATCTTCCCCTCTTCTTCTGACACGGTTCTGTGGTGGTTGTCACTTTGGACGGCTTCAGGCACCAGACTGTTTATACTGAAAGATGATTTAGGAATCATTTTCACTTCTTTCCGTTCTCCCATATCCAACATCACACGCAAGGTCAAATTGCAATAAGCAGCAGCACAGTTATATCTCAATATCTTACACCGGCAACTCTGCTAATAAAAACTATTTCATGTTCTTTACAACACATCGATAGGAGACAGATAGCTACAA

Function

NR:

description
forkhead box protein G1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2253707 True 2287 TUCP 0.41 1 29522760 29525046

Neighbor

gene id symbol gene type direction distance location
LOC110505761 ankrd9 coding downstream 142221 29378279 ~ 29380539 (-)
znf839 znf839 coding downstream 182839 29334672 ~ 29339921 (-)
si:ch211-266o15.1 LOC106611192 coding downstream 201752 29290704 ~ 29321008 (-)
ptp4a2a LOC106611191 coding downstream 251880 29267052 ~ 29270880 (-)
LOC110505749 NA coding downstream 255885 29220723 ~ 29266875 (-)
LOC110505765 LOC106611200 coding upstream 191556 29716602 ~ 29766891 (-)
LOC118944366 NA coding upstream 313228 29838274 ~ 29857889 (-)
LOC110505769 LOC106611207 coding upstream 393235 29918281 ~ 29937851 (-)
LOC110505770 LOC100380626 coding upstream 417073 29942119 ~ 29979525 (-)
LOC110504221 NA coding upstream 468711 29993757 ~ 29996679 (-)
G1971356 NA non-coding downstream 2373 29519832 ~ 29520387 (-)
G1971343 NA non-coding downstream 10903 29511245 ~ 29511857 (-)
G1971302 NA non-coding downstream 67847 29450784 ~ 29454913 (-)
G1971274 NA non-coding downstream 117156 29404980 ~ 29405604 (-)
G1971239 tecpr2 non-coding downstream 172791 29344785 ~ 29349969 (-)
G1971360 NA non-coding upstream 1758 29526804 ~ 29527109 (-)
G1971366 NA non-coding upstream 5663 29530709 ~ 29530910 (-)
G1971378 NA non-coding upstream 12362 29537408 ~ 29537630 (-)
G1971397 NA non-coding upstream 25270 29550316 ~ 29550624 (-)
G1971466 NA non-coding upstream 70455 29595501 ~ 29595710 (-)
G1970606 NA other downstream 660773 28857940 ~ 28861987 (-)
G1969724 NA other downstream 1378998 28143438 ~ 28143762 (-)
G1969699 LOC100380709 other downstream 1421324 28099921 ~ 28101436 (-)
LOC110505716 LOC106024658 other downstream 2757389 26716542 ~ 26765410 (-)
G1967882 NA other downstream 2984052 26535364 ~ 26538708 (-)
G1972454 NA other upstream 457238 29982284 ~ 29982900 (-)
G1972746 npas3 other upstream 982505 30507551 ~ 30508058 (-)
G1972810 NA other upstream 1091542 30616588 ~ 30683403 (-)
G1972851 NA other upstream 1239910 30764956 ~ 30765933 (-)
G1973793 NA other upstream 2059494 31584540 ~ 31585046 (-)

Expression


Co-expression Network