G1971541


Basic Information

Item Value
gene id G1971541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29647138 ~ 29647442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2253891
ttcctgaccaaggcccttctcccccgattgctcagtttggccagctctaggaagattatgggtggctccaaacttcttccatttaagaatgatggaggccaaacTGGAGACCTTCAATtatgcagatattttttggtacccttccccagatccgtgcctcgacacaatcctgtcttggagctctacggacaattccttcgacctcatagcttggtttttgctctgacatgcactgtcaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgttcaatcaatagaatttaccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2253891 True 305 lncRNA 0.46 1 29647138 29647442

Neighbor

gene id symbol gene type direction distance location
LOC110505764 LOC106611199 coding upstream 122062 29522690 ~ 29525076 (+)
LOC110505763 ehd4 coding upstream 195516 29408807 ~ 29451622 (+)
LOC110505762 traf3 coding upstream 241531 29392556 ~ 29405607 (+)
LOC110505760 rcor1 coding upstream 255040 29381713 ~ 29392098 (+)
LOC110505758 tecpr2 coding upstream 269289 29342451 ~ 29377849 (+)
LOC110505766 LOC106611201 coding downstream 212206 29859648 ~ 29886359 (+)
LOC110505767 LOC106611206 coding downstream 241275 29888717 ~ 29906400 (+)
LOC110505772 NA coding downstream 292637 29940079 ~ 29941170 (+)
LOC110505773 LOC106611209 coding downstream 359919 30007361 ~ 30077294 (+)
LOC110505775 LOC106611224 coding downstream 445013 30092455 ~ 30330735 (+)
G1971538 NA non-coding upstream 1009 29645817 ~ 29646129 (+)
G1971535 NA non-coding upstream 3304 29643591 ~ 29643834 (+)
G1971497 LOC100136012 non-coding upstream 30759 29616135 ~ 29616379 (+)
G1971495 NA non-coding upstream 31339 29615474 ~ 29615799 (+)
G1971438 NA non-coding upstream 69766 29576797 ~ 29577372 (+)
G1971628 NA non-coding downstream 118921 29766363 ~ 29780434 (+)
G1971652 NA non-coding downstream 160635 29808077 ~ 29846420 (+)
G1971840 NA non-coding downstream 291918 29939360 ~ 29939648 (+)
G1971833 NA non-coding downstream 294701 29942143 ~ 29943150 (+)
G1971831 LOC100380626 non-coding downstream 300150 29947592 ~ 29948425 (+)
G1971104 NA other upstream 168755 29474120 ~ 29478383 (+)
G1970001 NA other upstream 1233219 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2558822 26988390 ~ 27099710 (+)
G1967965 NA other upstream 2991802 26654905 ~ 26655336 (+)
G1967032 NA other upstream 3813817 25831576 ~ 25833321 (+)
G1972242 NA other downstream 982886 30630328 ~ 30632667 (+)
G1972244 NA other downstream 989612 30637054 ~ 30655039 (+)
G1972245 NA other downstream 1011962 30659404 ~ 30679995 (+)
G1972252 NA other downstream 1047791 30695233 ~ 30696314 (+)

Expression


Co-expression Network