Gene
RNA
| Item | Value |
|---|---|
| gene id | G1971628 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 29766363 ~ 29780434 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| serine/threonine-protein kinase D1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2253997 | True | 647 | lncRNA | 0.45 | 2 | 29766363 | 29780434 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505764 | LOC106611199 | coding | upstream | 241287 | 29522690 ~ 29525076 (+) |
| LOC110505763 | ehd4 | coding | upstream | 314741 | 29408807 ~ 29451622 (+) |
| LOC110505762 | traf3 | coding | upstream | 360756 | 29392556 ~ 29405607 (+) |
| LOC110505760 | rcor1 | coding | upstream | 374265 | 29381713 ~ 29392098 (+) |
| LOC110505758 | tecpr2 | coding | upstream | 388514 | 29342451 ~ 29377849 (+) |
| LOC110505766 | LOC106611201 | coding | downstream | 79214 | 29859648 ~ 29886359 (+) |
| LOC110505767 | LOC106611206 | coding | downstream | 108283 | 29888717 ~ 29906400 (+) |
| LOC110505772 | NA | coding | downstream | 159645 | 29940079 ~ 29941170 (+) |
| LOC110505773 | LOC106611209 | coding | downstream | 226927 | 30007361 ~ 30077294 (+) |
| LOC110505775 | LOC106611224 | coding | downstream | 312021 | 30092455 ~ 30330735 (+) |
| G1971541 | NA | non-coding | upstream | 118921 | 29647138 ~ 29647442 (+) |
| G1971538 | NA | non-coding | upstream | 120234 | 29645817 ~ 29646129 (+) |
| G1971535 | NA | non-coding | upstream | 122529 | 29643591 ~ 29643834 (+) |
| G1971497 | LOC100136012 | non-coding | upstream | 149984 | 29616135 ~ 29616379 (+) |
| G1971495 | NA | non-coding | upstream | 150564 | 29615474 ~ 29615799 (+) |
| G1971652 | NA | non-coding | downstream | 27643 | 29808077 ~ 29846420 (+) |
| G1971840 | NA | non-coding | downstream | 158926 | 29939360 ~ 29939648 (+) |
| G1971833 | NA | non-coding | downstream | 161709 | 29942143 ~ 29943150 (+) |
| G1971831 | LOC100380626 | non-coding | downstream | 167158 | 29947592 ~ 29948425 (+) |
| G1971879 | NA | non-coding | downstream | 215538 | 29995972 ~ 29996919 (+) |
| G1971104 | NA | other | upstream | 287980 | 29474120 ~ 29478383 (+) |
| G1970001 | NA | other | upstream | 1352444 | 28413600 ~ 28413919 (+) |
| LOC110505721 | ccdc88c | other | upstream | 2678047 | 26988390 ~ 27099710 (+) |
| G1967965 | NA | other | upstream | 3111027 | 26654905 ~ 26655336 (+) |
| G1967032 | NA | other | upstream | 3933042 | 25831576 ~ 25833321 (+) |
| G1972242 | NA | other | downstream | 849894 | 30630328 ~ 30632667 (+) |
| G1972244 | NA | other | downstream | 856620 | 30637054 ~ 30655039 (+) |
| G1972245 | NA | other | downstream | 878970 | 30659404 ~ 30679995 (+) |
| G1972252 | NA | other | downstream | 914799 | 30695233 ~ 30696314 (+) |
