G1971812 (LOC106611206)


Basic Information

Item Value
gene id G1971812
gene name LOC106611206
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29896740 ~ 29906400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254196
CTGAGTAAGACTGTTAATCTTTATTTGTTGAGAGTGTAAAGATAATTAGGTAAACAAACAATGTAAGTACAGTACACATGATAAAATACATGGAATATCAGAGAGAGAACCTAGAGGTAAGATTCTACAGTATAATTCGGGAGGTCTTGAGTATTTAGGAGAAATGGAattgaagaaaataaaaatgttcatatattttcttgtttttacTTTTGGCCGAGTGAGGACAGCTGCTTGATGAACTGTCCTGCATTGAAGAGCTCACTGCATCCGTACAGCACCCTCTTCCCTGGCTTTGCCTTTGTGTAGTCCACCAGGTTTTGATATTCTACGTAGTTCCCTCCTCCCACCATGAAGACGATAGCCTCTTGAAACGGGTTCTTGTTCCTTGGGATGGAGCTCTCACTGCCACGTAGCATCTTGGGATCAAAGTATCTGTAGTCATCTGTCTCCGGGTTGGACTTCATCTCCATCAGGTTGTCCAGGATACGTGTGACGGGCAGGTTATGCTGTTTGAGCACCAGGTGCTTCACCCCCTCCATGACAAACTGGGAGCCAGAGTTCATCACCCTAGAGAAGAGGcccataGGTTTTACACCGCTGTTCCCATAGTTAGATGGTGTGGCAGCAATCTTAGTGAAAGCCTTCCACTGCTTGATGTAGTTGACAGGGGACAGGTCACAGCCTGTGTCTAGCAGAGCCTTCTTGTATTGGTCCAGATCAGTCTCTGAAGTGGGCTGCAGGGCTGTGATGTAGAAAATCAGAAAGAGTCTCATCTTGTCCTCCGGTGTTCCCGCGTCAGGGTCACTGATTATGTCCAGTAAAGACTCCTCCAGGGTGGATTTGCTCATCAGCTTCTCCTCGTACTCAAAGTACACATCTAGTTTACGGCTCTGTGGATACATCCCATAAGGTGTAGATTAGTTCAAGAGGATTTTTAGGCAACCCTTTGACAGATGTAGTAACTTTATATGAGATAGTAGAACTGCGATTGCACAGCACAACAGTCTTCCATATGTGTACAATATCTGAGAATAGTGTTAATGGGACGCTGTTCACTGTGGACATAAAGagaaccctctctctctagacacagagAACACTCTGTCTGGCCAAGAC
>TU2254198
CTGAGTAAGACTGTTAATCTTTATTTGTTGAGAGTGTAAAGATAATTAGGTAAACAAACAATGTAAGTACAGTACACATGATAAAATACATGGAATATCAGAGAGAGAACCTAGAGGTAAGATTCTACAGTATAATTCGGGAGGTCTTGAGTATTTAGGAGAAATGGAattgaagaaaataaaaatgttcatatattttcttgtttttacTTTTGGCCGAGTGAGGACAGCTGCTTGATGAACTGTCCTGCATTGAAGAGCTCACTGCATCCGTACAGCACCCTCTTCCCTGGCTTTGCCTTTGTGTAGTCCACCAGGTTTTGATATTCTACGTAGTTCCCTCCTCCCACCATGAAGACGATAGCCTCTTGAAACGGGTTCTTGTTCCTTGGGATGGAGCTCTCACTGCCACGTAGCATCTTGGGATCAAAGTATCTGTAGTCATCTGTCTCCGGGTTGGACTTCATCTCCATCAGGTTGTCCAGGATACGTGTGACGGGCAGGTTATGCTGTTTGAGCACCAGGTGCTTCACCCCCTCCATGACAAACTGGGAGCCAGAGTTCATCACCCTAGAGAAGAGGcccataGGTTTTACACCGCTGTTCCCATAGTTAGATGGTGTGGCAGCAATCTTAGTGAAAGCCTTCCACTGCTTGATGTAGTTGACAGGGGACAGGTCACAGCCTGTGTCTAGCAGAGCCTTCTTGTATTGGTCCAGATCAGTCTACATCACAGAACATAAAGAATGCCTGTTTTCGACAAGGCAAAACATACAAGTGATCGAGCAGGGATTCAAGGTCAAGTACCCCGAAGGGATCGACACCCATTGTTCATAAACAGAGTGTGAGGCCAAGTGTGATGGGTGTGGTGGCATCATCTTTATAGTATGGAATGACGGCAGAGTCTGTTTAATGTACCATGTTACACCACATCTGCCAGGGAAAACAAATAACCTTAAGAGCAGGAGTGGACGGATGAACCGGGAGAGGGTAATCCCATGGTGATAATCTACCCAGGGAGGGTTCAGGTTCATGGGGACAGAGACGAAAGGAGAAATACCATAGACATTAGTGGTAGAAAACAATTTCCTGCTTGACTTCAGCTGTCAGGCCAGGGGACAGCATGgtgt
>TU2254197
CTGAGTAAGACTGTTAATCTTTATTTGTTGAGAGTGTAAAGATAATTAGGTAAACAAACAATGTAAGTACAGTACACATGATAAAATACATGGAATATCAGAGAGAGAACCTAGAGGTAAGATTCTACAGTATAATTCGGGAGGTCTTGAGTATTTAGGAGAAATGGAattgaagaaaataaaaatgttcatatattttcttgtttttacTTTTGGCCGAGTGAGGACAGCTGCTTGATGAACTGTCCTGCATTGAAGAGCTCACTGCATCCGTACAGCACCCTCTTCCCTGGCTTTGCCTTTGTGTAGTCCACCAGGTTTTGATATTCTACGTAGTTCCCTCCTCCCACCATGAAGACGATAGCCTCTTGAAACGGGTTCTTGTTCCTTGGGATGGAGCTCTCACTGCCACGTAGCATCTTGGGATCAAAGTATCTGTAGTCATCTGTCTCCTGCAGATCATATATCATCAGTACACCAAACTCAATTCTAGAAACCCTCAATTCCTTCCATTGCTTAGAGGTCACCCAATTCCTCTTAGTAACCACAGCTCCTGTACAAGCAGGATGGATCCTGTGAGACACATTTAACTCATTCAGATCAGACaatacccctctctccctccccattttGCAAAGTAGCTTAAGTATCTAAAAAAGTAATTCTTCACAAATAGTGATGAATAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254196 False 1119 lncRNA 0.45 11 29896740 29906400
TU2254198 False 1130 lncRNA 0.45 9 29901712 29906400
TU2254197 True 686 lncRNA 0.40 5 29905068 29906400

Neighbor

gene id symbol gene type direction distance location
LOC118944366 NA coding downstream 38851 29838274 ~ 29857889 (-)
LOC110505765 LOC106611200 coding downstream 129849 29716602 ~ 29766891 (-)
LOC110505761 ankrd9 coding downstream 516201 29378279 ~ 29380539 (-)
znf839 znf839 coding downstream 556819 29334672 ~ 29339921 (-)
si:ch211-266o15.1 LOC106611192 coding downstream 575732 29290704 ~ 29321008 (-)
LOC110505769 LOC106611207 coding upstream 11881 29918281 ~ 29937851 (-)
LOC110505770 LOC100380626 coding upstream 35719 29942119 ~ 29979525 (-)
LOC110504221 NA coding upstream 87357 29993757 ~ 29996679 (-)
LOC110505778 LOC106611226 coding upstream 950650 30857050 ~ 30872023 (-)
sptssa NA coding upstream 968994 30875080 ~ 30880165 (-)
G1971747 NA non-coding downstream 68015 29798166 ~ 29828725 (-)
G1971583 NA non-coding downstream 223937 29672124 ~ 29672803 (-)
G1971540 LOC106579309 non-coding downstream 249714 29646767 ~ 29647026 (-)
G1971496 NA non-coding downstream 280948 29615569 ~ 29615792 (-)
G1971494 NA non-coding downstream 281284 29615051 ~ 29615456 (-)
G1972448 NA non-coding upstream 32900 29939300 ~ 29939549 (-)
G1972450 NA non-coding upstream 34824 29941224 ~ 29941514 (-)
G1972491 LOC106611209 non-coding upstream 169119 30075519 ~ 30077670 (-)
G1972520 LOC106562530 non-coding upstream 218288 30124688 ~ 30129288 (-)
G1972552 NA non-coding upstream 263619 30170019 ~ 30170241 (-)
G1971357 LOC106611199 other downstream 371694 29522760 ~ 29525046 (-)
G1970606 NA other downstream 1034753 28857940 ~ 28861987 (-)
G1969724 NA other downstream 1752978 28143438 ~ 28143762 (-)
G1969699 LOC100380709 other downstream 1795304 28099921 ~ 28101436 (-)
LOC110505716 LOC106024658 other downstream 3131369 26716542 ~ 26765410 (-)
G1972454 NA other upstream 75884 29982284 ~ 29982900 (-)
G1972746 npas3 other upstream 601151 30507551 ~ 30508058 (-)
G1972810 NA other upstream 710188 30616588 ~ 30683403 (-)
G1972851 NA other upstream 858556 30764956 ~ 30765933 (-)
G1973793 NA other upstream 1678140 31584540 ~ 31585046 (-)

Expression


Co-expression Network