G1971840


Basic Information

Item Value
gene id G1971840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29939360 ~ 29939648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254227
agacctgagattgggatggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatgtccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254227 True 289 lncRNA 0.42 1 29939360 29939648

Neighbor

gene id symbol gene type direction distance location
LOC110505767 LOC106611206 coding upstream 32960 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 53001 29859648 ~ 29886359 (+)
LOC110505764 LOC106611199 coding upstream 414284 29522690 ~ 29525076 (+)
LOC110505763 ehd4 coding upstream 487738 29408807 ~ 29451622 (+)
LOC110505762 traf3 coding upstream 533753 29392556 ~ 29405607 (+)
LOC110505772 NA coding downstream 431 29940079 ~ 29941170 (+)
LOC110505773 LOC106611209 coding downstream 67713 30007361 ~ 30077294 (+)
LOC110505775 LOC106611224 coding downstream 152807 30092455 ~ 30330735 (+)
LOC110505776 LOC106611225 coding downstream 396887 30336535 ~ 30846679 (+)
LOC110505785 LOC106611232 coding downstream 1052651 30992299 ~ 31000393 (+)
G1971652 NA non-coding upstream 92940 29808077 ~ 29846420 (+)
G1971628 NA non-coding upstream 158926 29766363 ~ 29780434 (+)
G1971541 NA non-coding upstream 291918 29647138 ~ 29647442 (+)
G1971538 NA non-coding upstream 293231 29645817 ~ 29646129 (+)
G1971535 NA non-coding upstream 295526 29643591 ~ 29643834 (+)
G1971833 NA non-coding downstream 2495 29942143 ~ 29943150 (+)
G1971831 LOC100380626 non-coding downstream 7944 29947592 ~ 29948425 (+)
G1971879 NA non-coding downstream 56324 29995972 ~ 29996919 (+)
G1971889 NA non-coding downstream 89630 30029278 ~ 30031807 (+)
G1971858 NA non-coding downstream 138471 30078119 ~ 30078514 (+)
G1971104 NA other upstream 460977 29474120 ~ 29478383 (+)
G1970001 NA other upstream 1525441 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2851044 26988390 ~ 27099710 (+)
G1967965 NA other upstream 3284024 26654905 ~ 26655336 (+)
G1967032 NA other upstream 4106039 25831576 ~ 25833321 (+)
G1972242 NA other downstream 690680 30630328 ~ 30632667 (+)
G1972244 NA other downstream 697406 30637054 ~ 30655039 (+)
G1972245 NA other downstream 719756 30659404 ~ 30679995 (+)
G1972252 NA other downstream 755585 30695233 ~ 30696314 (+)

Expression


Co-expression Network