G1971833


Basic Information

Item Value
gene id G1971833
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29942143 ~ 29943150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254220
TGGAGCATACACATTTGAAAATATCTGTTTACTTCAAATTGCAACTtgagttaaataaatgtttataaTATACAAAGAAAATACAAGGGAAAGCATAGCTTGctttttttctttttaaatgtGCCTTGCACACAGAACCAGTGTTTTTGTCTCTATAGCTTTATTGTAAAATTACACAAGAAATGCACTCAGGGACTTTGATCCTTATAGCAGGATAACAAACAATCAAAACATACATAACGAAAAAAACGAAGAGCAAAAATAATAAGCATGTGCATCATGATTGTATGCCGTAAGATTAAGTAAAAGGAGGGAAAAATGTAATCCTAATATTCAAACAATGCAGGCACTAGTAAAACTTAACCTGGTAAGGAAATGCCCAAACACACTACAGTTAGCGCTACAGAAGCAGATGCCCTTCTCCCCTCAGGTCACGCAGGGAAAGGAAGGGGGTTGACAGCCGGGTGGTGGAGAGATGGTGGCAATCTAAAAACCCTAAAATCTACAGAGAATGTACAGATGCTCACAGCCAGAGTatgagagagagtaaacactGTAGACCATGAGGAAACTGTCTTCTAGTCGCTCAAGTCCTTCAAGCAGCAGTGTgccctggggagggagggagctgtagTGGGTGGAGCGGAGGAAGGTGGGGGTGCCCCGGACCTTATCTGTATCAGTAGCTAGTTGAGCCAACATGGGACTGTTTTCCTAGAGTTCACAGGGGGAAAGGACGGAACAGGGGACATTTAAgggaggggggagagagatctaTTTTTCTGCAACAAAACACAATAGGCTTCACCAGCAGGGGGGGTTTGTCAGTCAGAATGGGGCAGACAGGGCATGCTCAGTTGAGGTGGAAGCCCTTCTCCATGGTGGCAGCTAGGAGACGCTCTCTCATGATGTCTTCAGAGGAATACTCTGGCAGCTTCAGATAGTGTACACAAGTGTTAACAGAGGGATAGCTGGAGTCTGC

Function

NR:

description
E3 ubiquitin-protein ligase HECTD1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254220 True 982 lncRNA 0.44 2 29942143 29943150

Neighbor

gene id symbol gene type direction distance location
LOC110505772 NA coding upstream 973 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 35743 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 55784 29859648 ~ 29886359 (+)
LOC110505764 LOC106611199 coding upstream 417067 29522690 ~ 29525076 (+)
LOC110505763 ehd4 coding upstream 490521 29408807 ~ 29451622 (+)
LOC110505773 LOC106611209 coding downstream 64211 30007361 ~ 30077294 (+)
LOC110505775 LOC106611224 coding downstream 149305 30092455 ~ 30330735 (+)
LOC110505776 LOC106611225 coding downstream 393385 30336535 ~ 30846679 (+)
LOC110505785 LOC106611232 coding downstream 1049149 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 1057366 31000516 ~ 31040820 (+)
G1971840 NA non-coding upstream 2495 29939360 ~ 29939648 (+)
G1971652 NA non-coding upstream 95723 29808077 ~ 29846420 (+)
G1971628 NA non-coding upstream 161709 29766363 ~ 29780434 (+)
G1971541 NA non-coding upstream 294701 29647138 ~ 29647442 (+)
G1971538 NA non-coding upstream 296014 29645817 ~ 29646129 (+)
G1971831 LOC100380626 non-coding downstream 4442 29947592 ~ 29948425 (+)
G1971879 NA non-coding downstream 52822 29995972 ~ 29996919 (+)
G1971889 NA non-coding downstream 86128 30029278 ~ 30031807 (+)
G1971858 NA non-coding downstream 134969 30078119 ~ 30078514 (+)
G1971900 NA non-coding downstream 141374 30084524 ~ 30086043 (+)
G1971104 NA other upstream 463760 29474120 ~ 29478383 (+)
G1970001 NA other upstream 1528224 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2853827 26988390 ~ 27099710 (+)
G1967965 NA other upstream 3286807 26654905 ~ 26655336 (+)
G1967032 NA other upstream 4108822 25831576 ~ 25833321 (+)
G1972242 NA other downstream 687178 30630328 ~ 30632667 (+)
G1972244 NA other downstream 693904 30637054 ~ 30655039 (+)
G1972245 NA other downstream 716254 30659404 ~ 30679995 (+)
G1972252 NA other downstream 752083 30695233 ~ 30696314 (+)

Expression


Co-expression Network