G1972491 (LOC106611209)


Basic Information

Item Value
gene id G1972491
gene name LOC106611209
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30075519 ~ 30077670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254952
CAGCTGCACACTCCTTTCTCCCCTTCCACCACATTATCTGGAGTGTCTCTATAGAGACGAATAACAATAATAGGTTGTCTGAactggcatcctattccctatatagtgcacttcttttgaccaggatccatagggctctggtgaaatgTAGTGAACTACGtagggaattagggtgccatttaagtCACAGGCATAGTCTTGAGTCTTAAAAATGTCTTCGATCTGTCAATCTGTTTCCCCCTTCATCCCACcaagctcctctctccctctacttacACTTTTCCTTTCCAGAACTTTCTAAGCAGCATCTTTTACTTACAGCAAAACAGAATTCCGTACCATTTACAAAGAAGCAATGGTTCTTTATTCATAAGATGAATGGCATTAAGTACACAGTCAATTAATCTAGCCCAAACATTTTTGTACATCATACCACAAATAAATCTGATTATAGTAGGTTTTACAAGATTATACAGAATTTCAGTACCCCATGGTATtttgctaataataataatcatatctgctgataaatatatatatatatatatatatatatatatatatatatatatatatacttacacacacacatatatatatatatatatacacacatacacttatATATAATTTCCCCCCCTCTATTTAAGGGAAACAATTAGACAGATAACCAAAATATGATATTAAGAGTTAACTTGCATTGCAAAAAGAATGAATGAACAATAGATACAATTTCAGCCCTGTTTCAATGTTTCCCTCAATCAAGTTAGATAAAAAAATATCATCTGAATGAAAGCGGTTAATGTTGAGTTGTAAATTCAgtctttttttttattgttcATTTTTTGGAGGCAAAAAAATACATGCAAATTTAGTTGAACAAACAGAGGAAAACAAAGGTCTCTTATTGGTGAGTATCAAGACCGCCAAGACATTTCATCAATGAAACAAAACAAGAGAGACCGAGACTGCTTTGCAATGAGTTCATTTCAGAGTTAACACAGAGATGTGCCAGTAGGGTTCTAGTAGTGGGATGCTTCCTTCATAAGCTTCAGGAATTGCATGAGTTCTGCTCCAATAGGAGGCCAGTCTGTCTTATGTCCCGGTCTGGTGCAGTACAGCATCAGTCTTTCACGTAGAGTCCCCTCCCTCCCAAACAGTGCGAGGCGTTGGGAGCAGGTAGACACAAAGCCTGCCAACGTtcactgtctttctgtccctcaaACCGTTCAGATAAAAATGTAAATCATACTGGTAAAAATACAAGAATCCATCATCATCGCCAAATCATACAAAAAGAAACAAGCAGAAGAATGTCTACGCTGGTAGAAGTATCATAACAGATGATGCCTCATCTAACGTCAAGTTCACTTGAATGAATAAagggtttaaaaaaacaaaacacaactagtataaatatattttccttatATTTTGCAAGGTGTTGTAGAATTTAGCAAATCATTTTTGCATCGCATGTTTTTGTCCGTCTGCTGGAGGCATACAGCATCTTTATTACTGTGTATTACTGTACAGCACTGAATGAAGAAAAATGCATTTGTTTTGATGTTGTTTTTTGTTCCTGGGGGAGAGCTCGATGAGTCAGTCACCCCTGAATCCAGTCAGTCACCCAGAAAGGGGAGCAGAGAACAAAGTTGATCATTTAGTAATGTTGTTGTTTTGCAGTCAGAGGGACACCaaagggaggggaaaggaggacaCATCACCCTATGTCCCCCCACCAGCCCAGCCTTTCCCCTACCCCACCTAGGTCTATATGAGTGGTTCAGGCTGCAGGGACATACTGTGCTGGATCTGctggggctgaagaggagggggCAGCTGCAGGGGCCTCAGGGCCTCCACCATGCTGTGAcagtggtggggtggtggggtgctCTCGGTGCTGGAGCTCTCCTGGATGTCTCCGCTGTAGAAGAAGTAGTGGCTCTGCTGGATGAAGGACTCGATGACAGACTGGTTGAGCTTGGTGGTGGAGAGTGTGTCCTTGTTCTCAAAGTCGGGACGCATCAGCGTGGGCCAGAAGCAGATGGATAGATTGTCGGCTGTCATCAGGGTGGTCTTACTCTGCTGGCT
>TU2254955
CCCTGTTTCAATGTTTCCCTCAATCAAGTTAGATAAAAAAATATCATCTGAATGAAAGCGGTTAATGTTGAGTTGTAAATTCAgtctttttttttattgttcATTTTTTGGAGGCAAAAAAATACATGCAAATTTAGTTGAACAAACAGAGGAAAACAAAGGTCTCTTATTGGTGAGTATCAAGACCGCCAAGACATTTCATCAATGAAACAAAACAAGAGAGACCGAGACTGCTTTGCAATGAGTTCATTTCAGAGTTAACACAGAGATGTGCCAGTAGGGTTCTAGTAGTGGGATGCTTCCTTCATAAGCTTCAGGAATTGCATGAGTTCTGCTCCAATAGGAGGCCAGTCTGTCTTATGTCCCGGTCTGGTGCAGTACAGCATCAGTCTTTCACGTAGAGTCCCCTCCCTCCCAAACAGTGCGAGGCGTTGGGAGCAGGTAGACACAAAGCCTGCCAACGTtcactgtctttctgtccctcaaACCGTTCAGATAAAAATGTAAATCATACTGGTAAAAATACAAGAATCCATCATCATCGCCAAATCATACAAAAAGAAACAAGCAGAAGAATGTCTACGCTGGTAGAAGTATCATAACAGATGATGCCTCATCTAACGTCAAGTTCACTTGAATGAATAAagggtttaaaaaaacaaaacacaactagtataaatatattttccttatATTTTGCAAGGTGTTGTAGAATTTAGCAAATCATTTTTGCATCGCATGTTTTTGTCCGTCTGCTGGAGGCATACAGCATCTTTATTACTGTGTATTACTGTACAGCACTGAATGAAGAAAAATGCATTTGTTTTGATGTTGTTTTTTGTTCCTGGGGGAGAGCTCGATGAGTCAGTCACCCCTGAATCCAGTCAGTCACCCAGAAAGGGGAGCAGAGAACAAAGTTGATCATTTAGTAATGTTGTTGTTTTGCAGTCAGAGGGACACCaaagggaggggaaaggaggacaCATCACCCTATGTCCCCCCACCAGCCCAGCCTTTCCCCTACCCCACCTAGGTCTATATGAGTGGTTCAGGCTGCAGGGACATACTGTGCTGGATCTGctggggctgaagaggagggggCAGCTGCAGGGGCCTCAGGGCCTCCACCATGCTGTGAcagtggtggggtggtggggtgctCTCGGTGCTGGAGCTCTCCTGGATGTCTCCGCTGTAGAAGAAGTAGTGGCTCTGCTGGATGAAGGACTCGATGACAGACTGGTTGAGCTTGGTGGTGGAGAGTGTGTCCTTGTTCTCAAAGTCGGGACGCATCAGCGTGGGCCAGAAGCAGATGGATAGATTGTCGGCTGTCATCAGGGTGGTCTTACTCTGCTGGCT
>TU2254957
AAATTGAAACTACACAAAAGGTATATTCTATCTAGCAGCTGCACACTCCTTTCTCCCCTTCCACCACATTATCTGGAGTGTCTCTATAGAGACGAATAACAATAATAGGTTGTCTGAactggcatcctattccctatatagtgcacttcttttgaccaggatccatagggctctggtgaaatgTAGTGAACTACGtagggaattagggtgccatttaagtCACAGGCATAGTCTTGAGTCTTAAAAATGTCTTCGATCTGTCAATCTGTTTCCCCCTTCATCCCACcaagctcctctctccctctacttacACTTTTCCTTTCCAGAACTTTCTAAGCAGCATCTTTTACTTACAGCAAAACAGAATTCCGTACCATTTACAAAGAAGCAATGGTTCTTTATTCATAAGATGAATGGCATTAAGTACACAGTCAATTAATCTAGCCCAAACATTTTTGTACATCATACCACAAATAAATCTGATTATAGTAGGTTTTACAAGATTATACAGAATTTCAGTACCCCATGGTATtttgctaataataataatcatatctgctgataaatatatatatatatacttacacacacacatatatatatatatatatacacacatacacttatATATAATTTCCCCCCCTCTATTTAAGGGAAACAATTAGACAGATAACCAAAATATGATATTAAGAGTTAACTTGCATTGCAAAAAGAATGAATGAACAATAGATACAATTTCAGCCCTGTTTCAATGTTTCCCTCAATCAAGTTAGATAAAAAAATATCATCTGAATGAAAGCGGTTAATGTTGAGTTGTAAATTCAgtctttttttttattgttcATTTTTTGGAGGCAAAAAAATACATGCAAATTTAGTTGAACAAACAGAGGAAAACAAAGGTCTCTTATTGGTGAGTATCAAGACCGCCAAGACATTTCATCAATGAAACAAAACAAGAGAGACCGAGACTGCTTTGCAATGAGTTCATTTCAGAGTTAACACAGAGATGTGCCAGTAGGGTTCTAGTAGTGGGATGCTTCCTTCATAAGCTTCAGGAATTGCATGAGTTCTGCTCCAATAGGAGGCCAGTCTGTCTTATGTCCCGGTCTGGTGCAGTACAGCATCAGTCTTTCACGTAGAGTCCCCTCCCTCCCAAACAGTGCGAGGCGTTGGGAGCAGGTAGACACAAAGCCTGCCAACGTtcactgtctttctgtccctcaaACCGTTCAGATAAAAATGTAAATCATACTGGTAAAAATACAAGAATCCATCATCATCGCCAAATCATACAAAAAGAAACAAGCAGAAGAATGTCTACGCTGGTAGAAGTATCATAACAGATGATGCCTCATCTAACGTCAAGTTCACTTGAATGAATAAagggtttaaaaaaacaaaacacaactagtataaatatattttccttatATTTTGCAAGGTGTTGTAGAATTTAGCAAATCATTTTTGCATCGCATGTTTTTGTCCGTCTGCTGGAGGCATACAGCATCTTTATTACTGTGTATTACTGTACAGCACTGAATGAAGAAAAATGCATTTGTTTTGATGTTGTTTTTTGTTCCTGGGGGAGAGCTCGATGAGTCAGTCACCCCTGAATCCAGTCAGTCACCCAGAAAGGGGAGCAGAGAACAAAGTTGATCATTTAGTAATGTTGTTGTTTTGCAGTCAGAGGGACACCaaagggaggggaaaggaggacaCATCACCCTATGTCCCCCCACCAGCCCAGCCTTTCCCCTACCCCACCTAGGTCTATATGAGTGGTTCAGGCTGCAGGGACATACTGTGCTGGATCTGctggggctgaagaggagggggCAGCTGCAGGGGCCTCAGGGCCTCCACCATGCTGTGAcagtggtggggtggtggggtgctCTCGGTGCTGGAGCTCTCCTGGATGTCTCCGCTGTAGAAGAAGTAGTGGCTCTGCTGGATGAAGGACTCGATGACAGACTGGTTGAGCTTGGTGGTGGAGAGTGTGTCCTTGTTCTCAAAGTCGGGACGCATCAGCGTGGGCCAGAAGCAGATGGATAGATTGTCGGCTGTCATCAGGGTGGTCTTACTCTGCTGGCT

Function

NR:

description
rho GTPase-activating protein 5-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254952 False 2097 lncRNA 0.41 2 30075519 30077635
TU2254955 False 1359 lncRNA 0.45 2 30075519 30076897
TU2254957 True 2100 lncRNA 0.41 3 30075519 30077670

Neighbor

gene id symbol gene type direction distance location
LOC110504221 NA coding downstream 78840 29993757 ~ 29996679 (-)
LOC110505770 LOC100380626 coding downstream 95994 29942119 ~ 29979525 (-)
LOC110505769 LOC106611207 coding downstream 137668 29918281 ~ 29937851 (-)
LOC118944366 NA coding downstream 217630 29838274 ~ 29857889 (-)
LOC110505765 LOC106611200 coding downstream 308628 29716602 ~ 29766891 (-)
LOC110505778 LOC106611226 coding upstream 779380 30857050 ~ 30872023 (-)
sptssa NA coding upstream 797724 30875080 ~ 30880165 (-)
LOC110505780 eapp coding upstream 802964 30880634 ~ 30891858 (-)
LOC110505779 snx6 coding upstream 814320 30891990 ~ 30899754 (-)
LOC110505781 cf12 coding upstream 831305 30908975 ~ 30912793 (-)
G1972450 NA non-coding downstream 134005 29941224 ~ 29941514 (-)
G1972448 NA non-coding downstream 135970 29939300 ~ 29939549 (-)
G1971812 LOC106611206 non-coding downstream 169119 29896740 ~ 29906400 (-)
G1971747 NA non-coding downstream 246794 29798166 ~ 29828725 (-)
G1971583 NA non-coding downstream 402716 29672124 ~ 29672803 (-)
G1972520 LOC106562530 non-coding upstream 47018 30124688 ~ 30129288 (-)
G1972552 NA non-coding upstream 92349 30170019 ~ 30170241 (-)
G1972554 NA non-coding upstream 93563 30171233 ~ 30174260 (-)
G1972553 NA non-coding upstream 94807 30172477 ~ 30177859 (-)
G1972585 NA non-coding upstream 141699 30219369 ~ 30220121 (-)
G1972454 NA other downstream 92619 29982284 ~ 29982900 (-)
G1971357 LOC106611199 other downstream 550473 29522760 ~ 29525046 (-)
G1970606 NA other downstream 1213532 28857940 ~ 28861987 (-)
G1969724 NA other downstream 1931757 28143438 ~ 28143762 (-)
G1969699 LOC100380709 other downstream 1974083 28099921 ~ 28101436 (-)
G1972746 npas3 other upstream 429881 30507551 ~ 30508058 (-)
G1972810 NA other upstream 538918 30616588 ~ 30683403 (-)
G1972851 NA other upstream 687286 30764956 ~ 30765933 (-)
G1973793 NA other upstream 1506870 31584540 ~ 31585046 (-)
G1973835 LOC106611243 other upstream 1536751 31614421 ~ 31618499 (-)

Expression


Co-expression Network