G1971858


Basic Information

Item Value
gene id G1971858
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30078119 ~ 30078514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254248
CATGGTGTAGTATGAAAGTAAAAGAGTCGCTAAAGAGCAATACAACACAATCAACATTTCATGTGACAGGACTAGAACCTATTTGTCACATGAATTAATTATTTAAGCTCATATCTGCTTGAAACCTAAATTACAGGATCTGCAGTAGTTTCGAGAACAGTTTGTTCAGTTCAATTAATTCGATGTCCCAGTCACACAACCCCCCTCAGGCGAGAAGTGATGAAAGTACACCACCTGGTGGGGAAACATGTCCTAGCCGCAacatgaaaatatgtatttttatattCAGAAAAATGTATTGCAGCCTGGCCTGCTCATGTTTGTAGAACGTTTTTTAAAATTTTCTTTCTGTATTTTTTGTTCAAAATGTGTAATCATATTTGCACAGACATATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254248 True 396 lncRNA 0.36 1 30078119 30078514

Neighbor

gene id symbol gene type direction distance location
LOC110505773 LOC106611209 coding upstream 825 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 136949 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 171719 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 191760 29859648 ~ 29886359 (+)
LOC110505764 LOC106611199 coding upstream 553043 29522690 ~ 29525076 (+)
LOC110505775 LOC106611224 coding downstream 13941 30092455 ~ 30330735 (+)
LOC110505776 LOC106611225 coding downstream 258021 30336535 ~ 30846679 (+)
LOC110505785 LOC106611232 coding downstream 913785 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 922002 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 1002165 31080679 ~ 31082541 (+)
G1971889 NA non-coding upstream 46312 30029278 ~ 30031807 (+)
G1971879 NA non-coding upstream 81200 29995972 ~ 29996919 (+)
G1971831 LOC100380626 non-coding upstream 129694 29947592 ~ 29948425 (+)
G1971833 NA non-coding upstream 134969 29942143 ~ 29943150 (+)
G1971840 NA non-coding upstream 138471 29939360 ~ 29939648 (+)
G1971900 NA non-coding downstream 6010 30084524 ~ 30086043 (+)
G1971918 NA non-coding downstream 26046 30104560 ~ 30112578 (+)
G1971961 NA non-coding downstream 92154 30170668 ~ 30179444 (+)
G1971986 NA non-coding downstream 130679 30209193 ~ 30209559 (+)
G1972048 NA non-coding downstream 224982 30303496 ~ 30304726 (+)
G1971104 NA other upstream 599736 29474120 ~ 29478383 (+)
G1970001 NA other upstream 1664200 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 2989803 26988390 ~ 27099710 (+)
G1967965 NA other upstream 3422783 26654905 ~ 26655336 (+)
G1967032 NA other upstream 4244798 25831576 ~ 25833321 (+)
G1972242 NA other downstream 551814 30630328 ~ 30632667 (+)
G1972244 NA other downstream 558540 30637054 ~ 30655039 (+)
G1972245 NA other downstream 580890 30659404 ~ 30679995 (+)
G1972252 NA other downstream 616719 30695233 ~ 30696314 (+)

Expression


Co-expression Network