G1972520 (LOC106562530)


Basic Information

Item Value
gene id G1972520
gene name LOC106562530
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30124688 ~ 30129288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254987
gaacgacagattttgaccttgtcagctcagcgaTTCAATCTGGCAAttttacggttaactagtccaacgctctaaccacctgcctcacaaggagcccgcctgttactcgaatgcagtaagaagccaaggacGGTGGTAACCAGTCCCCTGCAGGAAGGTAAGGTGCCAGAGGTCCCTCGggcccctctggacatcgaggggcccCCGGCATACACGGTACGTTCCATCCTGGACTCTAGACGCCGGGTGAGgagcctgcagtacctcgtggattgAGAGGGGTacagtccggaggagaggtgctgggtaccggtggaggACATCTTGGATCCATCACTGCTGAGTGATTTCcaccgcctccatccggatcgccctctgggtcgtcctcgaggccatTGTCGGctcgctgcgggagccgcgcatc

Function

NR:

description
PREDICTED: chromo domain-containing protein cec-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254987 True 424 lncRNA 0.59 2 30124688 30129288

Neighbor

gene id symbol gene type direction distance location
LOC110504221 NA coding downstream 128009 29993757 ~ 29996679 (-)
LOC110505770 LOC100380626 coding downstream 145163 29942119 ~ 29979525 (-)
LOC110505769 LOC106611207 coding downstream 186837 29918281 ~ 29937851 (-)
LOC118944366 NA coding downstream 266799 29838274 ~ 29857889 (-)
LOC110505765 LOC106611200 coding downstream 357797 29716602 ~ 29766891 (-)
LOC110505778 LOC106611226 coding upstream 727762 30857050 ~ 30872023 (-)
sptssa NA coding upstream 746106 30875080 ~ 30880165 (-)
LOC110505780 eapp coding upstream 751346 30880634 ~ 30891858 (-)
LOC110505779 snx6 coding upstream 762702 30891990 ~ 30899754 (-)
LOC110505781 cf12 coding upstream 779687 30908975 ~ 30912793 (-)
G1972491 LOC106611209 non-coding downstream 47018 30075519 ~ 30077670 (-)
G1972450 NA non-coding downstream 183174 29941224 ~ 29941514 (-)
G1972448 NA non-coding downstream 185139 29939300 ~ 29939549 (-)
G1971812 LOC106611206 non-coding downstream 218288 29896740 ~ 29906400 (-)
G1971747 NA non-coding downstream 295963 29798166 ~ 29828725 (-)
G1972552 NA non-coding upstream 40731 30170019 ~ 30170241 (-)
G1972554 NA non-coding upstream 41945 30171233 ~ 30174260 (-)
G1972553 NA non-coding upstream 43189 30172477 ~ 30177859 (-)
G1972585 NA non-coding upstream 90081 30219369 ~ 30220121 (-)
G1972619 NA non-coding upstream 143610 30272898 ~ 30303976 (-)
G1972454 NA other downstream 141788 29982284 ~ 29982900 (-)
G1971357 LOC106611199 other downstream 599642 29522760 ~ 29525046 (-)
G1970606 NA other downstream 1262701 28857940 ~ 28861987 (-)
G1969724 NA other downstream 1980926 28143438 ~ 28143762 (-)
G1969699 LOC100380709 other downstream 2023252 28099921 ~ 28101436 (-)
G1972746 npas3 other upstream 378263 30507551 ~ 30508058 (-)
G1972810 NA other upstream 487300 30616588 ~ 30683403 (-)
G1972851 NA other upstream 635668 30764956 ~ 30765933 (-)
G1973793 NA other upstream 1455252 31584540 ~ 31585046 (-)
G1973835 LOC106611243 other upstream 1485133 31614421 ~ 31618499 (-)

Expression


Co-expression Network