G1971961


Basic Information

Item Value
gene id G1971961
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30170668 ~ 30179444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254356
ggtagaagacacagcagcaaggtcattgatatagattagtatggtatggtagaagacacagcagtatggtcattgatatagattagtatggtattgtagaagacacagcagcaaggtcattgatagagattagtatggtatggtagaagacacagcagcaaggtcattgatatagattagtatggtagaagacacagcagcaaggtccttgatatagattagtattgtagaagacacagcagcaaggtcattgatagagattagtatggtatggtagaagacacagcagcaaggtcattgatatagattagtatggtagaagacacagcagcaaggtccttgatatagattagtatggtagaagacacagcagcaaggtcattgatatagattagtatggtatggtagaagacacagcagcaaggtccttgatatagattattatggtatggtagaagacacagcagcaaggtccttgatatagattagtatggtatggtaggagacacagcagcaaggtcattgatatagattagtatggtatggtagaagacacagcagcaaggtccttgatatagattattatggtatggtagaagacacagcagcaaggtccttgatatagattagtatggtatggtagaagacacagcagcaaggtcattgatat
>TU2254355
gtagaagacacagcagcaaggtcattgatatagattagtatggtatgatAGAAGACACAgaagcaaggtcattgatatagattagtatggtatggtagaagacacagcagcaaggtccttgatatagattagtatggtagaagacacagcagcaaggtcattgatatagattagtatggtagaagacacagcagcaaggtccttgatatagattagtattgtagaagacacagcagcaaggtcattgatagagattagtatggtatggtagaagacacagcagcaaggtcattgatataccTTAAGATGGTATAGTAGAAGACACAGCTGTatggtcattgatatagattagtatggtatggtagaagacacagcagtatggtcattgatatagattattatggtatggtagaagacacagcagcaaggtcattgatatagaagacacagcagcaagttcattgatatagattagtatggtatggtagaagacacagcagcaaggtcattgat
>TU2254358
ggtcattgatatagcagcaacgtcattgatatagattattatggtatggtagaagacacagcagcaaggtcattgatatagattagtatggtatggtagaagacacagcagcaaggtcattgatatagattagtatggtatggtagaagacacagcagcaaggtcattcaTATAGAttattatggtatggtagaagacacagcagcaaggtcattgatatagattagtatggtatgatAGAAGACACAgaagcaaggtcattgatatagattagtatggtatggtagaagacacagcagcaaggtccttgatatagattagtatggtagaagacacagcagcaaggtcattgatatagattagtatggtagaagacacagcagcaaggtcattgatatagattagtatggtatggtagaagacacagcagcaaggtcattgatatagattagtatggtagaagacacagcagcaaggtcattgatataccTTAAGATGATATAGTAGAAGACACAGCAACAAgttcattgatatagatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254356 False 670 lncRNA 0.39 3 30170668 30177362
TU2254355 False 513 lncRNA 0.38 3 30174435 30178141
TU2254358 True 539 lncRNA 0.37 2 30176510 30179444

Neighbor

gene id symbol gene type direction distance location
LOC110505773 LOC106611209 coding upstream 93374 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 229498 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 264268 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 284309 29859648 ~ 29886359 (+)
LOC110505764 LOC106611199 coding upstream 645592 29522690 ~ 29525076 (+)
LOC110505776 LOC106611225 coding downstream 157091 30336535 ~ 30846679 (+)
LOC110505785 LOC106611232 coding downstream 812855 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 821072 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 901235 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 923840 31103284 ~ 31109026 (+)
G1971918 NA non-coding upstream 58090 30104560 ~ 30112578 (+)
G1971900 NA non-coding upstream 84625 30084524 ~ 30086043 (+)
G1971858 NA non-coding upstream 92154 30078119 ~ 30078514 (+)
G1971889 NA non-coding upstream 138861 30029278 ~ 30031807 (+)
G1971879 NA non-coding upstream 173749 29995972 ~ 29996919 (+)
G1971986 NA non-coding downstream 29749 30209193 ~ 30209559 (+)
G1972048 NA non-coding downstream 124052 30303496 ~ 30304726 (+)
G1972092 NA non-coding downstream 209315 30388759 ~ 30389010 (+)
G1972094 NA non-coding downstream 211454 30390898 ~ 30391174 (+)
G1972114 NA non-coding downstream 238534 30417978 ~ 30418310 (+)
G1971104 NA other upstream 692285 29474120 ~ 29478383 (+)
G1970001 NA other upstream 1756749 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 3082352 26988390 ~ 27099710 (+)
G1967965 NA other upstream 3515332 26654905 ~ 26655336 (+)
G1967032 NA other upstream 4337347 25831576 ~ 25833321 (+)
LOC110505775 LOC106611224 other downstream 144069 30092455 ~ 30330735 (+)
G1972242 NA other downstream 450884 30630328 ~ 30632667 (+)
G1972244 NA other downstream 457610 30637054 ~ 30655039 (+)
G1972245 NA other downstream 479960 30659404 ~ 30679995 (+)
G1972252 NA other downstream 515789 30695233 ~ 30696314 (+)

Expression


Co-expression Network