G1972048


Basic Information

Item Value
gene id G1972048
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30303496 ~ 30304726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254457
ctctcactctctctctgtctctcactctctctctgtctctgtctctcactctctctctctctctgtctctgtctctgtctctcactctctctctctctctgtctctgtctctctctctctctctctctctgtctctgtctctctctctgtctctctctctgtctctgtctctgtctctcactctctctctgtctctctctctctctc
>TU2254458
ctctcactctctctctgtctctcactctctctctgtctctgtctctcactctctctctctctctctgtctctgtctctgtctctctctctgtctctctctctgtctctgtctctgtctctcactctctctctgtctctgtctctgtctctctctctgtctctgtctctgtctctctctctgtctctctctctgtctctgtctctctctctgtctctctctctgtctctgtctctgtctctcactctctctctgtctctctctctctctc
>TU2254459
ctctcactctctctctgtctctcactctctctctgtctctgtctctcactctctctctctctctctgtctctgtctctgtctctctctctgtctctctctctgtctctgtctctgtctctcactctctctctgtctctgtctctgtctctctctctgtctctgtctctgtctctctctctgtctctctctctgtctctgtctctctctctgtctctctctctgtctctgtctctgtctctcacgctctcactctctctgtctctgtctctctctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254457 False 207 lncRNA 0.50 3 30303496 30304726
TU2254458 False 269 lncRNA 0.50 2 30303496 30304726
TU2254459 True 278 lncRNA 0.50 2 30303496 30304541

Neighbor

gene id symbol gene type direction distance location
LOC110505773 LOC106611209 coding upstream 226202 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 362326 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 397096 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 417137 29859648 ~ 29886359 (+)
LOC110505764 LOC106611199 coding upstream 778420 29522690 ~ 29525076 (+)
LOC110505776 LOC106611225 coding downstream 31809 30336535 ~ 30846679 (+)
LOC110505785 LOC106611232 coding downstream 687573 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 695790 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 775953 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 798558 31103284 ~ 31109026 (+)
G1971986 NA non-coding upstream 93937 30209193 ~ 30209559 (+)
G1971961 NA non-coding upstream 124052 30170668 ~ 30179444 (+)
G1971918 NA non-coding upstream 190918 30104560 ~ 30112578 (+)
G1971900 NA non-coding upstream 217453 30084524 ~ 30086043 (+)
G1971858 NA non-coding upstream 224982 30078119 ~ 30078514 (+)
G1972092 NA non-coding downstream 84033 30388759 ~ 30389010 (+)
G1972094 NA non-coding downstream 86172 30390898 ~ 30391174 (+)
G1972114 NA non-coding downstream 113252 30417978 ~ 30418310 (+)
G1972116 NA non-coding downstream 117801 30422527 ~ 30423680 (+)
G1972122 NA non-coding downstream 128163 30432889 ~ 30433146 (+)
G1971104 NA other upstream 825113 29474120 ~ 29478383 (+)
G1970001 NA other upstream 1889577 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 3215180 26988390 ~ 27099710 (+)
G1967965 NA other upstream 3648160 26654905 ~ 26655336 (+)
G1967032 NA other upstream 4470175 25831576 ~ 25833321 (+)
LOC110505775 LOC106611224 other downstream 18787 30092455 ~ 30330735 (+)
G1972242 NA other downstream 325602 30630328 ~ 30632667 (+)
G1972244 NA other downstream 332328 30637054 ~ 30655039 (+)
G1972245 NA other downstream 354678 30659404 ~ 30679995 (+)
G1972252 NA other downstream 390507 30695233 ~ 30696314 (+)

Expression


Co-expression Network