G1972122


Basic Information

Item Value
gene id G1972122
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30432889 ~ 30433146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254535
CCTATATattgtactacttttgaccagggcccatataatGCCCATAGGGCACTGGTAAAAAGCACTATATAGAGGATAACTGGTATTGTTTAAATGGTGGCCAACATAGATTACTCCACCACCACAGTATATGGCAACACATATTTTCCACAACTGTCATCACAAAGCGCCTTTATTTGAGTCCCTCTCTCAGAAAGAGTAATATGCTACAGAAGCAAATCCTGGATTCCTAAGATATGGTTGAAGGCTAGGAAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254535 True 258 lncRNA 0.40 1 30432889 30433146

Neighbor

gene id symbol gene type direction distance location
LOC110505775 LOC106611224 coding upstream 102154 30092455 ~ 30330735 (+)
LOC110505773 LOC106611209 coding upstream 355595 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 491719 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 526489 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 546530 29859648 ~ 29886359 (+)
LOC110505785 LOC106611232 coding downstream 559153 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 567370 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 647533 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 670138 31103284 ~ 31109026 (+)
LOC110505789 LOC106611239 coding downstream 781677 31214823 ~ 31220599 (+)
G1972116 NA non-coding upstream 9209 30422527 ~ 30423680 (+)
G1972114 NA non-coding upstream 14579 30417978 ~ 30418310 (+)
G1972094 NA non-coding upstream 41715 30390898 ~ 30391174 (+)
G1972092 NA non-coding upstream 43879 30388759 ~ 30389010 (+)
G1972048 NA non-coding upstream 128163 30303496 ~ 30304726 (+)
G1972124 NA non-coding downstream 2564 30435710 ~ 30435923 (+)
G1972127 NA non-coding downstream 4472 30437618 ~ 30437829 (+)
G1972129 NA non-coding downstream 8153 30441299 ~ 30441520 (+)
G1972136 NA non-coding downstream 17963 30451109 ~ 30451582 (+)
G1972137 NA non-coding downstream 19221 30452367 ~ 30452792 (+)
G1971104 NA other upstream 954506 29474120 ~ 29478383 (+)
G1970001 NA other upstream 2018970 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 3344573 26988390 ~ 27099710 (+)
G1967965 NA other upstream 3777553 26654905 ~ 26655336 (+)
G1972242 NA other downstream 197182 30630328 ~ 30632667 (+)
G1972244 NA other downstream 203908 30637054 ~ 30655039 (+)
G1972245 NA other downstream 226258 30659404 ~ 30679995 (+)
G1972252 NA other downstream 262087 30695233 ~ 30696314 (+)
G1973126 NA other downstream 724372 31157518 ~ 31157736 (+)

Expression


Co-expression Network