Gene
RNA
| Item | Value |
|---|---|
| gene id | G1972124 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 30435710 ~ 30435923 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| neuronal PAS domain-containing protein 3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2254537 | True | 214 | lncRNA | 0.54 | 1 | 30435710 | 30435923 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505775 | LOC106611224 | coding | upstream | 104975 | 30092455 ~ 30330735 (+) |
| LOC110505773 | LOC106611209 | coding | upstream | 358416 | 30007361 ~ 30077294 (+) |
| LOC110505772 | NA | coding | upstream | 494540 | 29940079 ~ 29941170 (+) |
| LOC110505767 | LOC106611206 | coding | upstream | 529310 | 29888717 ~ 29906400 (+) |
| LOC110505766 | LOC106611201 | coding | upstream | 549351 | 29859648 ~ 29886359 (+) |
| LOC110505785 | LOC106611232 | coding | downstream | 556376 | 30992299 ~ 31000393 (+) |
| LOC110505784 | LOC106611231 | coding | downstream | 564593 | 31000516 ~ 31040820 (+) |
| LOC118944303 | LOC106611235 | coding | downstream | 644756 | 31080679 ~ 31082541 (+) |
| LOC110505788 | LOC106611236 | coding | downstream | 667361 | 31103284 ~ 31109026 (+) |
| LOC110505789 | LOC106611239 | coding | downstream | 778900 | 31214823 ~ 31220599 (+) |
| G1972122 | NA | non-coding | upstream | 2564 | 30432889 ~ 30433146 (+) |
| G1972116 | NA | non-coding | upstream | 12030 | 30422527 ~ 30423680 (+) |
| G1972114 | NA | non-coding | upstream | 17400 | 30417978 ~ 30418310 (+) |
| G1972094 | NA | non-coding | upstream | 44536 | 30390898 ~ 30391174 (+) |
| G1972092 | NA | non-coding | upstream | 46700 | 30388759 ~ 30389010 (+) |
| G1972127 | NA | non-coding | downstream | 1695 | 30437618 ~ 30437829 (+) |
| G1972129 | NA | non-coding | downstream | 5376 | 30441299 ~ 30441520 (+) |
| G1972136 | NA | non-coding | downstream | 15186 | 30451109 ~ 30451582 (+) |
| G1972137 | NA | non-coding | downstream | 16444 | 30452367 ~ 30452792 (+) |
| G1972142 | NA | non-coding | downstream | 24415 | 30460338 ~ 30460673 (+) |
| G1971104 | NA | other | upstream | 957327 | 29474120 ~ 29478383 (+) |
| G1970001 | NA | other | upstream | 2021791 | 28413600 ~ 28413919 (+) |
| LOC110505721 | ccdc88c | other | upstream | 3347394 | 26988390 ~ 27099710 (+) |
| G1967965 | NA | other | upstream | 3780374 | 26654905 ~ 26655336 (+) |
| G1972242 | NA | other | downstream | 194405 | 30630328 ~ 30632667 (+) |
| G1972244 | NA | other | downstream | 201131 | 30637054 ~ 30655039 (+) |
| G1972245 | NA | other | downstream | 223481 | 30659404 ~ 30679995 (+) |
| G1972252 | NA | other | downstream | 259310 | 30695233 ~ 30696314 (+) |
| G1973126 | NA | other | downstream | 721595 | 31157518 ~ 31157736 (+) |
