G1972215


Basic Information

Item Value
gene id G1972215
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30587414 ~ 30587712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254632
atgcatggaattttagatccacttctccttaatgcaaccgctgtgtcagatttcaaaaaaactttacaaaaaaagcacaccatgcaataatctgagtacagcgctcagacacaaaaacaagccatacagatatccgccatgttgtggagtcaacagaagtcagaaatagccttataaatattcacttacctttgatgatcttcatcagaatgcactcccgggaatcccagttccacaataaatgtttgttttgttcgataaagtccatcatttatgtccaaataccgcCTTTATGTTCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254632 True 299 lncRNA 0.38 1 30587414 30587712

Neighbor

gene id symbol gene type direction distance location
LOC110505775 LOC106611224 coding upstream 256679 30092455 ~ 30330735 (+)
LOC110505773 LOC106611209 coding upstream 510120 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 646244 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 681014 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 701055 29859648 ~ 29886359 (+)
LOC110505785 LOC106611232 coding downstream 404587 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 412804 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 492967 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 515572 31103284 ~ 31109026 (+)
LOC110505789 LOC106611239 coding downstream 627111 31214823 ~ 31220599 (+)
G1972211 NA non-coding upstream 2931 30584266 ~ 30584483 (+)
G1972182 NA non-coding upstream 63793 30523325 ~ 30523621 (+)
G1972179 NA non-coding upstream 70169 30517029 ~ 30517245 (+)
G1972177 NA non-coding upstream 70985 30516212 ~ 30516429 (+)
G1972175 NA non-coding upstream 72541 30514670 ~ 30514873 (+)
G1972227 NA non-coding downstream 17399 30605111 ~ 30605352 (+)
G1972230 NA non-coding downstream 20128 30607840 ~ 30608646 (+)
G1972236 NA non-coding downstream 25948 30613660 ~ 30613977 (+)
G1972249 NA non-coding downstream 102806 30690518 ~ 30690802 (+)
G1972266 NA non-coding downstream 124882 30712594 ~ 30712849 (+)
G1971104 NA other upstream 1109031 29474120 ~ 29478383 (+)
G1970001 NA other upstream 2173495 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 3499098 26988390 ~ 27099710 (+)
G1967965 NA other upstream 3932078 26654905 ~ 26655336 (+)
G1972242 NA other downstream 42616 30630328 ~ 30632667 (+)
G1972244 NA other downstream 49342 30637054 ~ 30655039 (+)
G1972245 NA other downstream 71692 30659404 ~ 30679995 (+)
G1972252 NA other downstream 107521 30695233 ~ 30696314 (+)
G1973126 NA other downstream 569806 31157518 ~ 31157736 (+)

Expression


Co-expression Network