G1972230


Basic Information

Item Value
gene id G1972230
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30607840 ~ 30608646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254647
tatgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggagcgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagatgtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcctaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaaaaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtagtttaataaggatatggcagac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254647 True 807 lncRNA 0.41 1 30607840 30608646

Neighbor

gene id symbol gene type direction distance location
LOC110505775 LOC106611224 coding upstream 277105 30092455 ~ 30330735 (+)
LOC110505773 LOC106611209 coding upstream 530546 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 666670 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 701440 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 721481 29859648 ~ 29886359 (+)
LOC110505785 LOC106611232 coding downstream 383653 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 391870 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 472033 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 494638 31103284 ~ 31109026 (+)
LOC110505789 LOC106611239 coding downstream 606177 31214823 ~ 31220599 (+)
G1972227 NA non-coding upstream 2488 30605111 ~ 30605352 (+)
G1972215 NA non-coding upstream 20128 30587414 ~ 30587712 (+)
G1972211 NA non-coding upstream 23357 30584266 ~ 30584483 (+)
G1972182 NA non-coding upstream 84219 30523325 ~ 30523621 (+)
G1972179 NA non-coding upstream 90595 30517029 ~ 30517245 (+)
G1972236 NA non-coding downstream 5014 30613660 ~ 30613977 (+)
G1972249 NA non-coding downstream 81872 30690518 ~ 30690802 (+)
G1972266 NA non-coding downstream 103948 30712594 ~ 30712849 (+)
G1972270 NA non-coding downstream 115056 30723702 ~ 30723990 (+)
G1972272 NA non-coding downstream 116134 30724780 ~ 30724981 (+)
G1971104 NA other upstream 1129457 29474120 ~ 29478383 (+)
G1970001 NA other upstream 2193921 28413600 ~ 28413919 (+)
LOC110505721 ccdc88c other upstream 3519524 26988390 ~ 27099710 (+)
G1967965 NA other upstream 3952504 26654905 ~ 26655336 (+)
G1972242 NA other downstream 21682 30630328 ~ 30632667 (+)
G1972244 NA other downstream 28408 30637054 ~ 30655039 (+)
G1972245 NA other downstream 50758 30659404 ~ 30679995 (+)
G1972252 NA other downstream 86587 30695233 ~ 30696314 (+)
G1973126 NA other downstream 548872 31157518 ~ 31157736 (+)

Expression


Co-expression Network