G1972341


Basic Information

Item Value
gene id G1972341
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30827404 ~ 30827914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254768
TTGTTCTATTGCTAACATGACTTGCTAAGTTATAAAATAGGATCTTACAGTGTAAGGCTTTTCACAAGGCAACTCAGGGAAACAGATCATCATTTTGGTGTGCATAGAAAGGAATGATGAGAGTGTGAGCTTTAAAATAGACAAACAAACATTCTGTTCAGATCAACCCAGGGTAGGACGTCATGTCATCTTGGAACTGTACATCacacatagtgatcataaacgttgacactgtatatgacatgagtttgatgatatggaaatgtgaagtgcacatttggactcacgggtgtttggcttgtatgacatcaaatcagtatttattataatcctcaacgtctcatctttcaaaatacattgagtcctctcaatttacagcatttccctcactcagacaataaaacatttgcaaaagttgcccaattagtgggagggatgggagcaaCTTGTTGTCCCACGctgtgctcaagttcagaacggctgtcagtcagaacccatacagcgctgtgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254768 True 511 lncRNA 0.40 1 30827404 30827914

Neighbor

gene id symbol gene type direction distance location
LOC110505775 LOC106611224 coding upstream 496669 30092455 ~ 30330735 (+)
LOC110505773 LOC106611209 coding upstream 750110 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 886234 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 921004 29888717 ~ 29906400 (+)
LOC110505766 LOC106611201 coding upstream 941045 29859648 ~ 29886359 (+)
LOC110505785 LOC106611232 coding downstream 164385 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 172602 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 252765 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 275370 31103284 ~ 31109026 (+)
LOC110505789 LOC106611239 coding downstream 386909 31214823 ~ 31220599 (+)
G1972339 NA non-coding upstream 1961 30825225 ~ 30825443 (+)
G1972332 NA non-coding upstream 9900 30817270 ~ 30817504 (+)
G1972321 NA non-coding upstream 18171 30809011 ~ 30809233 (+)
G1972318 NA non-coding upstream 21784 30805410 ~ 30805620 (+)
G1972309 NA non-coding upstream 30834 30795939 ~ 30796570 (+)
G1972350 NA non-coding downstream 19975 30847889 ~ 30849985 (+)
G1972392 LOC106611229 non-coding downstream 87824 30915738 ~ 30916112 (+)
G1972408 LOC106611229 non-coding downstream 144257 30972171 ~ 30973065 (+)
G1972965 NA non-coding downstream 214543 31042457 ~ 31042706 (+)
G1972969 NA non-coding downstream 215977 31043891 ~ 31044178 (+)
G1972252 NA other upstream 131090 30695233 ~ 30696314 (+)
G1972245 NA other upstream 147409 30659404 ~ 30679995 (+)
G1972244 NA other upstream 172365 30637054 ~ 30655039 (+)
G1972242 NA other upstream 194737 30630328 ~ 30632667 (+)
G1973126 NA other downstream 329604 31157518 ~ 31157736 (+)
G1973193 NA other downstream 375701 31203615 ~ 31203991 (+)
G1973369 NA other downstream 559564 31387478 ~ 31387736 (+)
G1973635 NA other downstream 890610 31718524 ~ 31718968 (+)
G1973669 NA other downstream 959331 31787245 ~ 31789449 (+)

Expression


Co-expression Network