G1972392 (LOC106611229)


Basic Information

Item Value
gene id G1972392
gene name LOC106611229
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30915738 ~ 30916112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254821
CTGAGATTGGTCTTTTACGGGAGTCtgccagagacagagatggagtgagctggctgcctggcctgcTGGAGGTACCGTTGGTTGCCAATATCTCATGACTGAGCCGGGAGCTGACTCTGCTGCCTGGCCGTGGTGGAGGTCTGCCGTTGGAGACTGGGGTGGGCTTATTGGAGACTGGGGTGGGCTTATTCCCTGAGGACCTGGAAGCAGCTCCCTTCCCAGCTGAGGGGGCCTGTTTGGGGGTGGTCTGCTGGCTCCGGGGGGTGGAATGACTTGAGTTGGTCCTGCTCGACCGACTTCCTTTGGTAGTAGGCACAGCAGGTTTCACAGCAGTCCGGACCTTTTTAGCGGCac

Function

NR:

description
bromodomain adjacent to zinc finger domain protein 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254821 True 354 lncRNA 0.60 2 30915738 30916112

Neighbor

gene id symbol gene type direction distance location
LOC110505776 LOC106611225 coding upstream 69059 30336535 ~ 30846679 (+)
LOC110505775 LOC106611224 coding upstream 585003 30092455 ~ 30330735 (+)
LOC110505773 LOC106611209 coding upstream 838444 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 974568 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 1009338 29888717 ~ 29906400 (+)
LOC110505785 LOC106611232 coding downstream 76187 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 84404 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 164567 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 187172 31103284 ~ 31109026 (+)
LOC110505789 LOC106611239 coding downstream 298711 31214823 ~ 31220599 (+)
G1972350 NA non-coding upstream 65753 30847889 ~ 30849985 (+)
G1972341 NA non-coding upstream 87824 30827404 ~ 30827914 (+)
G1972339 NA non-coding upstream 90295 30825225 ~ 30825443 (+)
G1972332 NA non-coding upstream 98234 30817270 ~ 30817504 (+)
G1972321 NA non-coding upstream 106505 30809011 ~ 30809233 (+)
G1972408 LOC106611229 non-coding downstream 56059 30972171 ~ 30973065 (+)
G1972965 NA non-coding downstream 126345 31042457 ~ 31042706 (+)
G1972969 NA non-coding downstream 127779 31043891 ~ 31044178 (+)
G1972970 NA non-coding downstream 128257 31044369 ~ 31044625 (+)
G1972985 NA non-coding downstream 139401 31055513 ~ 31055926 (+)
G1972252 NA other upstream 219424 30695233 ~ 30696314 (+)
G1972245 NA other upstream 235743 30659404 ~ 30679995 (+)
G1972244 NA other upstream 260699 30637054 ~ 30655039 (+)
G1972242 NA other upstream 283071 30630328 ~ 30632667 (+)
G1973126 NA other downstream 241406 31157518 ~ 31157736 (+)
G1973193 NA other downstream 287503 31203615 ~ 31203991 (+)
G1973369 NA other downstream 471366 31387478 ~ 31387736 (+)
G1973635 NA other downstream 802412 31718524 ~ 31718968 (+)
G1973669 NA other downstream 871133 31787245 ~ 31789449 (+)

Expression


Co-expression Network