G1972408 (LOC106611229)


Basic Information

Item Value
gene id G1972408
gene name LOC106611229
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30972171 ~ 30973065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2254843
CGAGTGTGAGGCCTTCTGGGAACTCGTCCTTGAGGTCAAAGAGCTCTCCGAAGGCTTTGAGGAACTCCAGCACCATGAGAGCATCTCCGAACAGCTCTGCAGGCAGACGGGTCTCCACCGGCACTGGGGCTGGGAGATCCTCAGGTCGTCACACTCCATGTCTTCTCTGGGTTTGCTCCAGATCTTTAGTCTCTCTGCAtatttcttcttctcctccttcagcttctctctctcTTTTTCCTTTTCCACTTTCATACGTTCTTTCTCGTCTTTCCTCCTCTGCTTCTCCTCTTCAAACATCTTTTTCATCTCTTCCCTCTTCTTTTCTTtgtcctccttctctttctttttgGCCCCCAGGTCATCTTCCCTCTCCCGATTGGCCTTTTCATGTGCTGAACATGACAGATTCATTAAAACACATTGTCACCATTTTTGATATATAGATTAAATGTGGCAGCCAAACCATGGGATCATTCATACATCTTTT

Function

NR:

description
bromodomain adjacent to zinc finger domain protein 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2254843 True 490 lncRNA 0.47 3 30972171 30973065

Neighbor

gene id symbol gene type direction distance location
LOC110505776 LOC106611225 coding upstream 125492 30336535 ~ 30846679 (+)
LOC110505775 LOC106611224 coding upstream 641436 30092455 ~ 30330735 (+)
LOC110505773 LOC106611209 coding upstream 894877 30007361 ~ 30077294 (+)
LOC110505772 NA coding upstream 1031001 29940079 ~ 29941170 (+)
LOC110505767 LOC106611206 coding upstream 1065771 29888717 ~ 29906400 (+)
LOC110505785 LOC106611232 coding downstream 19234 30992299 ~ 31000393 (+)
LOC110505784 LOC106611231 coding downstream 27451 31000516 ~ 31040820 (+)
LOC118944303 LOC106611235 coding downstream 107614 31080679 ~ 31082541 (+)
LOC110505788 LOC106611236 coding downstream 130219 31103284 ~ 31109026 (+)
LOC110505789 LOC106611239 coding downstream 241758 31214823 ~ 31220599 (+)
G1972392 LOC106611229 non-coding upstream 56059 30915738 ~ 30916112 (+)
G1972350 NA non-coding upstream 122186 30847889 ~ 30849985 (+)
G1972341 NA non-coding upstream 144257 30827404 ~ 30827914 (+)
G1972339 NA non-coding upstream 146728 30825225 ~ 30825443 (+)
G1972332 NA non-coding upstream 154667 30817270 ~ 30817504 (+)
G1972965 NA non-coding downstream 69392 31042457 ~ 31042706 (+)
G1972969 NA non-coding downstream 70826 31043891 ~ 31044178 (+)
G1972970 NA non-coding downstream 71304 31044369 ~ 31044625 (+)
G1972985 NA non-coding downstream 82448 31055513 ~ 31055926 (+)
G1973107 NA non-coding downstream 176302 31149367 ~ 31149567 (+)
G1972252 NA other upstream 275857 30695233 ~ 30696314 (+)
G1972245 NA other upstream 292176 30659404 ~ 30679995 (+)
G1972244 NA other upstream 317132 30637054 ~ 30655039 (+)
G1972242 NA other upstream 339504 30630328 ~ 30632667 (+)
G1973126 NA other downstream 184453 31157518 ~ 31157736 (+)
G1973193 NA other downstream 230550 31203615 ~ 31203991 (+)
G1973369 NA other downstream 414413 31387478 ~ 31387736 (+)
G1973635 NA other downstream 745459 31718524 ~ 31718968 (+)
G1973669 NA other downstream 814180 31787245 ~ 31789449 (+)

Expression


Co-expression Network