G1973082


Basic Information

Item Value
gene id G1973082
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31107160 ~ 31108981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2255665
AGACATCAAAAAAACAGAGAAAGACAAAACGCTGACATTAAGCTGCACATAATCACCCATTTTCTGGTTTGAAAAATACCACAAAAAAGACTGGAATTTTGCTGTAGCCTATAAagaataacattttatttataaTTCATTTCCACTTGGAATTTAAGATTGTATcattcaTGCAAATTGTAACACATGGACATATTCATTGTGGGGACTACAAGTTTTGGGAATACAACATTATTTTACAAGCTCGAAATTGTTTTAAATACACTAGCAATGATTTACAGCTGGATATACAATCATTCAATTGGAAACACTTTACAGGACTATTGTATTTTACTCATACATATTGTTATACATTGAAGTAACAGTCCTTATGCACCAGGTGCATGCAAAAATAAGATAAATGTTTTCTGTTTGTCCTTTTGTCGAGCACTATAAAAATGAGAAGATACTAAGAAGTGTTGAGGACCGGTCTGGAATACACACCTTGATAGTATGACGCCTCTATTGCGGATGGGTCCATGGCTCTGCCTACCATGGACGCGCTGCCGAGGGGTAGACTGGAGGACATACTTGAGCCGTAGGAGGAGTATTGCAAAGCTTGCTCGTAGGCTTTCAAGTCCAGTTTGTGCTGTTGCTCTGAAGATGACATTAAATTATTTATTGAAAAGGGGTGGTTGAATGAGTAATGGGGATCCCCTTTTAGGTGCAGCTGGGACTCGTGCGCCATTGAGTGCggaggtaaagggagagaggacagggacgTGACGGAGCTGGCCACAGGGTGGAGAGGTGGCCCGCTGCTCTTTAGTTCAGAGGCGCTGCTACTGCTCCTGCGGTCCATTATGTGAGGGCTGGAGGACTGGTTGCAGGTGGAGAGGGAGTTGGGGTCCACATGTCCAGTCTTGCTGTTGTCGCTCGAAGGTGACCCAGAACCAGACTGGTCTTTCCTTCCGTCTCCTTTACTTGAAGATAGCTTTCTATTTTCGCATTTAAAGCGCTTTTGTCTGCGGAGATAACAACCGTTCTCGAACATATTTCCAGAATCTGGGTGCAGGGCCCAGTATGAGCCTTTGCCTGGTTTATCCGGTGATCTAGACACTTTGATGAAACAATCATTAAAAGACAAGGAATGGCGAATAGAGTTCTGCCACCTCTGTTGGTTCTGTCTGTAGTATGGAAATAGGTCCATTATCCATTGGTAGATTTCGCTAAGCGTGAGCATCTTGCTTGGTGCTTGCTGAATGGCCATGGTTATCAGGGATATGTATGAATACGGAGGCTTTGCGTGCGGGTAGCTTCTCCTGAACGACTTGTTGTCCCTTGCTCGGTTCAGGTTGGGCTGATTATAGGACATTTGGCTCATTGTAGGGCTCATGCTGGCGTATGGATTCAGAGCGTTCATGGAAGCCTGCTGAGCCGACATTGCGCCCATGTTCGAGGGGCTAAGGGCAGTGCCCATTGACGATACCCCGCCGCACATTCCATTCATGGACGTGCTCGGAGGCATCCCTGCCATTGTACCGGGGCTTATTCCGGCTCCCAGGCCGGGGTTCGCGTAGGACATGTTGAAAGAACCGGAGGTCATATTTCCACTGGTAGACATACTCATGTAACTGTTCATACTATTCATGGAACCCAGTCCTGCATTCATGCCGC

Function

NR:

description
hepatocyte nuclear factor 3-alpha-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2255665 True 1656 lncRNA 0.46 2 31107160 31108981

Neighbor

gene id symbol gene type direction distance location
LOC110505787 LOC106611255 coding downstream 17862 31087360 ~ 31089298 (-)
LOC110505783 LOC106611230 coding downstream 115071 30986765 ~ 30992089 (-)
LOC110505782 LOC106611229 coding downstream 121396 30913042 ~ 30985764 (-)
LOC110505781 cf12 coding downstream 194367 30908975 ~ 30912793 (-)
LOC110505779 snx6 coding downstream 207406 30891990 ~ 30899754 (-)
LOC110504336 NA coding upstream 5887 31114868 ~ 31148068 (-)
LOC110505792 NA coding upstream 163068 31272049 ~ 31274777 (-)
LOC110505798 LOC106611244 coding upstream 513061 31622042 ~ 31632417 (-)
LOC110504224 LOC106611245 coding upstream 523778 31632759 ~ 31636055 (-)
LOC110505800 LOC106611246 coding upstream 533767 31642748 ~ 31710036 (-)
G1972999 NA non-coding downstream 42377 31064494 ~ 31064783 (-)
G1972973 NA non-coding downstream 61301 31045571 ~ 31045859 (-)
G1972967 NA non-coding downstream 64595 31042363 ~ 31042565 (-)
G1972937 NA non-coding downstream 79038 30996765 ~ 31028122 (-)
G1972932 NA non-coding downstream 139119 30967758 ~ 30968041 (-)
G1973117 NA non-coding upstream 43972 31152953 ~ 31153306 (-)
G1973120 NA non-coding upstream 45038 31154019 ~ 31154258 (-)
G1973127 NA non-coding upstream 48428 31157409 ~ 31157639 (-)
G1973279 NA non-coding upstream 93090 31202071 ~ 31202413 (-)
G1973281 NA non-coding upstream 97473 31206454 ~ 31206766 (-)
G1972851 NA other downstream 341227 30764956 ~ 30765933 (-)
G1972810 NA other downstream 423757 30616588 ~ 30683403 (-)
G1972746 npas3 other downstream 599102 30507551 ~ 30508058 (-)
G1972454 NA other downstream 1124260 29982284 ~ 29982900 (-)
G1971357 LOC106611199 other downstream 1582114 29522760 ~ 29525046 (-)
G1973793 NA other upstream 475559 31584540 ~ 31585046 (-)
G1973835 LOC106611243 other upstream 505440 31614421 ~ 31618499 (-)
G1974000 NA other upstream 877462 31986443 ~ 31986884 (-)
G1975453 NA other upstream 2210748 33319729 ~ 33324325 (-)
G1975763 NA other upstream 2447449 33556430 ~ 33556811 (-)

Expression


Co-expression Network