G1973267



Basic Information


Item Value
gene id G1973267
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31218351 ~ 31219578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2255859
gcctagttatgaGCTGGGTTAACTGTCAGATTTAAAATGTGTGACACTGCTCACAACCAGAGACAAGTTTGTTACAAAAACGCTATGACTGCTAACCCGGTACACTAGTGGTAGCTTAGACCAGGGTACAAAACTCTGCCTTTGTTACATTTGTCATATACAGATGTACAAAGGGAGACAATACCACACTTAAAAATACATGTGTATAAGGGAAAGTGGCATTACCTTCTCCAACCCAGCTTAGTTCCAACTCAAACGATTTGTCTTTCACTTCATCATGTACAATGTAGATTCTACAAAACATCCAACAGTACATGTTAGTAGCAACTTAATATGCAGTGCCTTGATTGGTTTGTGTTCCTTTAatacaacaaacaaaaacacttaCATTTTGGCCACCTCTTTTACCAACTCCCTGCAGGTCATGTCTTTCATCTGTTGATAGCAATAGCATACACAAATCAAACAATTAAGCAAGATCTTCCCTTGTCTTAAACTTGGCTCAAGTAATATTCTTACCTGAAGCTTTTCAATTTCTGTCTTGGCGGCTTGCTTGGCTTTTCCAATAGCACATCCCCAGTAACCCTTGATAAAAATATGAGATTCCAGAGGGGTCAACCATGTACAGCTGAGGACCATCATCTTGATCGTAAGAGCCCAAAATGAAGCTACATCCAAACGGCCGCACCGCACTGTATAGCGTGTAGGCATGGACGTACATGGCCACTCTCTCTGAGAGATGCTGTAAAGAGAGATTATACAGTTAAAGTCAAAAGTTAACCTCCCggttggcgcagtggttaagggcgctgtactgcagcgccagctgtgccaccagagaccctgggttcgt

Function


NR:

description
proteasome subunit alpha type-3 isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2255859 True 853 lncRNA 0.42 2 31218351 31219578

Neighbor


gene id symbol gene type direction distance location
LOC110504336 NA coding downstream 70283 31114868 ~ 31148068 (-)
LOC110505787 LOC106611255 coding downstream 129053 31087360 ~ 31089298 (-)
LOC110505783 LOC106611230 coding downstream 226262 30986765 ~ 30992089 (-)
LOC110505782 LOC106611229 coding downstream 232587 30913042 ~ 30985764 (-)
LOC110505781 cf12 coding downstream 305558 30908975 ~ 30912793 (-)
LOC110505792 NA coding upstream 52471 31272049 ~ 31274777 (-)
LOC110505798 LOC106611244 coding upstream 402464 31622042 ~ 31632417 (-)
LOC110504224 LOC106611245 coding upstream 413181 31632759 ~ 31636055 (-)
LOC110505800 LOC106611246 coding upstream 423170 31642748 ~ 31710036 (-)
LOC110505801 LOC106611247 coding upstream 493821 31713399 ~ 31741477 (-)
G1973284 NA non-coding downstream 8672 31209370 ~ 31209679 (-)
G1973282 NA non-coding downstream 9580 31208562 ~ 31208771 (-)
G1973281 NA non-coding downstream 11585 31206454 ~ 31206766 (-)
G1973279 NA non-coding downstream 15938 31202071 ~ 31202413 (-)
G1973127 NA non-coding downstream 60712 31157409 ~ 31157639 (-)
G1973263 NA non-coding upstream 807 31220385 ~ 31266956 (-)
G1973310 NA non-coding upstream 56600 31276178 ~ 31276475 (-)
G1973311 NA non-coding upstream 57326 31276904 ~ 31277157 (-)
G1973316 LOC106611240 non-coding upstream 68514 31288092 ~ 31290968 (-)
G1972851 NA other downstream 452418 30764956 ~ 30765933 (-)
G1972810 NA other downstream 534948 30616588 ~ 30683403 (-)
G1972746 npas3 other downstream 710293 30507551 ~ 30508058 (-)
G1972454 NA other downstream 1235451 29982284 ~ 29982900 (-)
G1971357 LOC106611199 other downstream 1693305 29522760 ~ 29525046 (-)
G1973793 NA other upstream 364962 31584540 ~ 31585046 (-)
G1973835 LOC106611243 other upstream 394843 31614421 ~ 31618499 (-)
G1974000 NA other upstream 766865 31986443 ~ 31986884 (-)
G1975453 NA other upstream 2100151 33319729 ~ 33324325 (-)
G1975763 NA other upstream 2336852 33556430 ~ 33556811 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G151446 psma3,LOC107729246,LOC107725600 non-coding CM030141.1 CM030141.1 19612250 ~ 19619068 (-)
mexican tetra (Astyanax mexicanus) G140822 NA non-coding NC_035912.1 CM008315.1 11806832 ~ 11807230 (-)