G1973633 (LOC106611247)


Basic Information

Item Value
gene id G1973633
gene name LOC106611247
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31713433 ~ 31715906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2256252
CAAGGCATCTTCCTTTCTCTTACGTCAACATCCTAAACGTAACGGTTATTGACCCCATATAAAAACATGAGAAATATCTTTACAAAAAACAACCATCGTTCTCAAAGTGGAAAAACTTCACTATTTACATGGCCTATTATAAAAAAAATGGAGTTTAATAATATTGTTTTACAGAAATTTAATCTACACTATATGGTTCTAACCAACAGGTCTTGATGCAGTTTAACAAGATGGCTGGCTTTTAATTCTGCAAGCTTTACCTCTTAGCAACATTTCATTTCCCCCAATTCAACCACAAATACACAAATtctttcaaatggcacccataGTCATTTCTACTAATATTATAGTGAATGTCAGGGTGTAATTATTACATACATCACTGAAGTGAAGCTGCTCTTAGAAAAAAGTCACAAGCGCTGCAGATTCAATTACCTGTCCATTATGACAATATTTATCAAGGGTTTTCTATGTTGAGATGTGTTGTCTGCACTGCAAACTGAGCGGTTAGTAGTTAGTGTAGAAAACAGTGTgccatacaaaaaaatatataattacagATGAAATGTTCCTTAAAAGGTGAAGTAACTACAAACATGAAGAAACAGAGATTTCCCACTCCAATATGGAGACAGGATTTTTTCAGAGGccctatacacacacaacatTACAGTACTATGAACAGAACTGGCACCCGTACCATCAGATGTCTGTCTACAAATCCTCTTGCTCTGATAGAACAAATAATATACTCTAAGGGCTCAAACACACCAATAGTGTTTGTCTGCTGAGAGTACTTGTGAACCGAGTGCAAACCGGTTTTACATATAGAAACGTGCGAAGACGTCAACAGCGCGCTTAACAACAAGCTGTAAACGACAGATCTACATGTGTGTAACCCTTAAAGGCAGAACATACTGGAAACCCTTAAATGTACCAAGGTCCTGGCAGCTTATTATTATAGAATATTCATTGAATCTCCTCTTTAAAATGAGGGAAAGAAAAGCAACAGTTCagggcctgtatttatagtgtcTTAGACATgcgttgatctaggatcagatccatGTGAacttattcattatgatccaaAAGGTtaaactgattctagatctgtaCTCTTATTCTGAGACACTTCTAGATAGGAGATTTgaacagaaaaacaaacaaaaactccTGACTGTCAGAACAGTGTCATGTCAGTCTTTCCGATACGCCCCGTTAGGTAGTGTTGCttctaaaacaaaacaaaatcacATTTTTCACAAGGATATCCTAAATGTATGTTCGTAAATGCAGTTATCCCCGATTGGTTTAGCCAGaagggtcatattcattaagtcACACTGTAGAGAAATGCTTTGCAACAGAAAATGAACGTTTCTCATTGGACAAGTTCAAGTAGTCTCACCCCATTTCAGTCCGTTTTTGTCCGTTTGTTGCCGAATGAATACGACCTATGTGAATGGGGGTATTGAGGAGAGATGGCTACAATGTCGACCTGAGCCTAAGTGAGTTGGTTCTTAGTTCTATGTCTGAGGGTTGCTCTTTAGTCATCGTGGGTCTAGTCTTGGCATGGGCCTCATCTGCAGCAGTGGGGGCGGGGTCAGGGCATCCCCCGGCTTCTCATTGGACTCCAGCACCTCGGCCACGCCTCCAACTTTCATCTGCAGCAGCAGTGGCGGGGTCAGTGCTTTTTGCAGTACATCTTGACCTTTTGTAGTGCATGCTTTAGCTTGTTGGCTGTGCCCGTTGACAGCAGGAGCAGAAACAGTCTCTGATGGTTTCAGGTTGGATCCAAAACCAACTTTAAGGTCCTCTGCCTGTGGTATTGGCAGACCTGGGCCTTTGGAAGTCTTTTCCTGGCCCTTGTCCTCATCCAGTCTCAGGAACAAGGGGCTGAGGGAGCGCTCGTCATCTCCATCTCCGATGATCTCCTTCTCTGTCTTTGGTGGTAGTAGCACCCTGTCTGTCTGAGGTGTGGGTACCCTCACAGTCCCCATCTGCCCAGGCTCGGTGTGTGGTATGCGGGAGACCACTGGAGGACCTCTGGGGCTGCTGTTGTTGTCTGTGGTAATCTGCTGGTTAAGGATGAAGATCTCGTTGAGGACAGACGTCAGGCTCTCGTCTTCACCATCACCATCTTTGTTGTCTTCGTCCTCCTCAGAGTTTCCATCTGCGTCGTTGATCCCTACACTGTCTACAGCGTGGTCCAGCTGCTTCCCCAGAACCTCTCCGTACTCCAACCCACTGCCCCTACCCTTCACTGGGGCTGGCCTCCTCTGAGCTCCCCCTGACACACCTGGAGCTGACTGGTTCTGTTGGGCTTTAACCAATGAAATGACATCGGTGAAATTAG
>TU2256253
CAAGGCATCTTCCTTTCTCTTACGTCAACATCCTAAACGTAACGGTTATTGACCCCATATAAAAACATGAGAAATATCTTTACAAAAAACAACCATCGTTCTCAAAGTGGAAAAACTTCACTATTTACATGGCCTATTATAAAAAAAATGGAGTTTAATAATATTGTTTTACAGAAATTTAATCTACACTATATGGTTCTAACCAACAGGTCTTGATGCAGTTTAACAAGATGGCTGGCTTTTAATTCTGCAAGCTTTACCTCTTAGCAACATTTCATTTCCCCCAATTCAACCACAAATACACAAATtctttcaaatggcacccaGTCATTTCTACTAATATTATAGTGAATGTCAGGGTGTAATTATTACATACATCACTGAAGTGAAGCTGCTCTTAGAAAAAAGTCACAAGCGCTGCAGATTCAATTACCTGTCCATTATGACAATATTTATCAAGGGTTTTCTATGTTGAGATGTGTTGTCTGCACTGCAAACTGAGCGGTTAGTAGTTAGTGTAGAAAACAGTGTgccatacaaaaaaatatataattacagATGAAATGTTCCTTAAAAGGTGAAGTAACTACAAACATGAAGAAACAGAGATTTCCCACTCCAATATGGAGACAGGATTTTTTCAGAGGccctatacacacacaacatTACAGTACTATGAACAGAACTGGCACCCGTACCATCAGATGTCTGTCTACAAATCCTCTTGCTCTGATAGAACAAATAATATACTCTAAGGGCTCAAACACACCAATAGTGTTTGTCTGCTGAGAGTACTTGTGAACCGAGTGCAAACCGGTTTTACATATAGAAACGTGCGAAGACGTCAACAGCGCGCTTAACAACAAGCTGTAAACGACAGATCTACATGTGTGTAACCCTTAAAGGCAGAACATACTGGAAACCCTTAAATGTACCAAGGTCCTGGCAGCTTATTATTATAGAATATTCATTGAATCTCCTCTTTAAAATGAGGGAAAGAAAAGCAACAGTTCagggcctgtatttatagtgtcTTAGACATgcgttgatctaggatcagatccatGTGAacttattcattatgatccaaAAGGTtaaactgattctagatctgtaCTCTTATTCTGAGACACTTCTAGATAGGAGATTTgaacagaaaaacaaacaaaaactccTGACTGTCAGAACAGTGTCATGTCAGTCTTTCCGATACGCCCCGTTAGGTAGTGTTGCttctaaaacaaaacaaaatcacATTTTTCACAAGGATATCCTAAATGTATGTTCGTAAATGCAGTTATCCCCGATTGGTTTAGCCAGaagggtcatattcattaagtcACACTGTAGAGAAATGCTTTGCAACAGAAAATGAACGTTTCTCATTGGACAAGTTCAAGTAGTCTCACCCCATTTCAGTCCGTTTTTGTCCGTTTGTTGCCGAATGAATACGACCTATGTGAATGGGGGTATTGAGGAGAGATGGCTACAATGTCGACCTGAGCCTAAGTGAGTTGGTTCTTAGTTCTATGTCTGAGGGTTGCTCTTTAGTCATCGTGGGTCTAGTCTTGGCATGGGCCTCATCTGCAGCAGTGGGGGCGGGGTCAGGGCATCCCCCGGCTTCTCATTGGACTCCAGCACCTCGGCCACGCCTCCAACTTTCATCTGCAGCAGCAGTGGCGGGGTCAGTGCTTTTTGCAGTACATCTTGACCTTTTGTAGTGCATGCTTTAGCTTGTTGGCTGTGCCCGTTGACAGCAGGAGCAGAAACAGTCTCTGATGGTTTCAGGTTGGATCCAAAACCAACTTTAAGGTCCTCTGCCTGTGGTATTGGCAGACCTGGGCCTTTGGAAGTCTTTTCCTGGCCCTTGTCCTCATCCAGTCTCAGGAACAAGGGGCTGAGGGAGCGCTCGTCATCTCCATCTCCGATGATCTCCTTCTCTGTCTTTGGTGGTAGTAGCACCCTGTCTGTCTGAGGTGTGGGTACCCTCACAGTCCCCATCTGCCCAGGCTCGGTGTGTGGTATGCGGGAGACCACTGGAGGACCTCTGGGGCTGCTGTTGTTGTCTGTGGTAATCTGCTGGTTAAGGATGAAGATCTCGTTGAGGACAGACGTCAGGCTCTCGTCTTCACCATCACCATCTTTGTTGTCTTCGTCCTCCTCAGAGTTTCCATCTGCGTCGTTGATCCCTACACTGTCTACAGCGTGGTCCAGCTGCTTCCCCAGAACCTCTCCGTACTCCAACCCACTGCCCCTACCCTTCACTGGGGCTGGCCTCCTCTGAGCTCCCCCTGACACACCTGGAGCTGACTGGTTCTGTTGGGCTTTAACCAATGAAATGACATCGGTGAAATTAG

Function

NR:

description
MAX associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2256252 False 2359 lncRNA 0.44 3 31713433 31715906
TU2256253 True 2357 lncRNA 0.44 3 31713433 31715906

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-181 NA coding upstream 23158 31690200 ~ 31690275 (+)
LOC118944345 NA coding upstream 70687 31640296 ~ 31642746 (+)
LOC110505797 LOC106611243 coding upstream 94908 31589889 ~ 31618525 (+)
LOC110505796 leg3 coding upstream 125801 31576483 ~ 31587632 (+)
LOC110505795 LOC106611242 coding upstream 253967 31446911 ~ 31459466 (+)
LOC110505805 LOC106602325 coding downstream 91581 31807487 ~ 31910358 (+)
LOC110504226 LOC100195551 coding downstream 218826 31934732 ~ 31977371 (+)
LOC110510947 LOC106611254 coding downstream 305366 32021272 ~ 32135673 (+)
LOC118944263 NA coding downstream 1408661 33124567 ~ 33142910 (+)
LOC110504337 NA coding downstream 1567080 33282986 ~ 33288608 (+)
G1973605 NA non-coding upstream 38024 31673497 ~ 31675409 (+)
G1973568 NA non-coding upstream 100133 31613052 ~ 31613300 (+)
G1973564 NA non-coding upstream 103776 31609358 ~ 31609657 (+)
G1973563 NA non-coding upstream 104813 31608410 ~ 31608620 (+)
G1973649 LOC106611247 non-coding downstream 15755 31731661 ~ 31733672 (+)
G1973646 NA non-coding downstream 24937 31740843 ~ 31741517 (+)
G1973652 NA non-coding downstream 57786 31773692 ~ 31775891 (+)
G1973670 NA non-coding downstream 68793 31784699 ~ 31786918 (+)
G1973721 NA non-coding downstream 173810 31889716 ~ 31918882 (+)
G1973369 NA other upstream 325697 31387478 ~ 31387736 (+)
G1973193 NA other upstream 509442 31203615 ~ 31203991 (+)
G1973126 NA other upstream 555697 31157518 ~ 31157736 (+)
G1972252 NA other upstream 1017119 30695233 ~ 30696314 (+)
G1972245 NA other upstream 1033438 30659404 ~ 30679995 (+)
G1973635 NA other downstream 2618 31718524 ~ 31718968 (+)
G1973669 NA other downstream 71339 31787245 ~ 31789449 (+)
G1973717 NA other downstream 164204 31880110 ~ 31880820 (+)

Expression


Co-expression Network