G1976106


Basic Information

Item Value
gene id G1976106
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 33907727 ~ 33912767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2258948
gtcgagggcgcacccatctacagggtccgtaggattttggacatgcgtcctcggggccgtggtcatcagtacctagtagattgggaggggtacggtcctgaggagaggagttgggtcccctctcgggacgtgctggaccgtgcgctgatcgatgatttcctccgttgccgccaggtttcctcctcgagtgcgccaggaggcgctcggtgagtgggggggtactgtcatgtattgtcatgttgtgtcttgtttctgtcctttcccttcaccctgtctccctctgctggtcgttattaggttaccttttctccccctctttcccccagctgttccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgat
>TU2258949
gtcgagggcgcacccatctacagggtccgtaggattttggacatgcgtcctcggggccgtggtcatcagtacctagtagattgggaggggtacggtcctgaggagaggagttgggtcccctctcgggacgtgctggaccgtgcgctgatcgatgatttcctccgttgccgccaggtttcctcctcgagtgcgccaggaggcgctcggtgagtgggggggtactgtcatgtattgtcatgttgtgtcttgtttctgtcctttcccttcaccctgtctccctctgctggtcgttattaggttaccttttctccccctctttcccccagctgttccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgat
>TU2258950
gtcgagggcgcacccatctacagggtccgtaggattttggacatgcgtcctcggggccgtggtcatcagtacctagtagattgggaggggtacggtcctgaggagaggagttgggtcccctctcgggacgtgctggaccgtgcgctgatcgatgatttcctccgttgccgccaggtttcctcctcgagtgcgccaggaggcgctcggtgagtgggggggtactgtcatgtattgtcatgttgtgtcttgtttctgtcctttcccttcaccctgtctccctctgctggtcgttattaggttaccttttctccccctctttcccccagctgttccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgat

Function

NR:

description
PREDICTED: uncharacterized protein LOC109108415

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2258948 False 393 lncRNA 0.57 2 33907727 33912767
TU2258949 False 393 lncRNA 0.57 2 33907727 33912767
TU2258950 True 393 lncRNA 0.57 2 33907727 33912767

Neighbor

gene id symbol gene type direction distance location
LOC110504337 NA coding upstream 619119 33282986 ~ 33288608 (+)
LOC118944263 NA coding upstream 764817 33124567 ~ 33142910 (+)
LOC110510947 LOC106611254 coding upstream 1772054 32021272 ~ 32135673 (+)
LOC110504226 LOC100195551 coding upstream 1930356 31934732 ~ 31977371 (+)
LOC110505805 LOC106602325 coding upstream 1997369 31807487 ~ 31910358 (+)
dnal1 dnal1 coding downstream 533934 34446701 ~ 34452841 (+)
tedc1 LOC106611146 coding downstream 544748 34457515 ~ 34477147 (+)
tmem121aa LOC106602575 coding downstream 768965 34681732 ~ 34685739 (+)
LOC110505824 snap23 coding downstream 838117 34750884 ~ 34771020 (+)
LOC110505830 LOC106611281 coding downstream 1099928 35012695 ~ 35056944 (+)
G1976102 NA non-coding upstream 9442 33897895 ~ 33898285 (+)
G1976101 NA non-coding upstream 10364 33897147 ~ 33897363 (+)
G1976067 NA non-coding upstream 67649 33836113 ~ 33840078 (+)
G1976058 NA non-coding upstream 87009 33820193 ~ 33820718 (+)
G1976003 NA non-coding upstream 149874 33757632 ~ 33757853 (+)
G1976109 NA non-coding downstream 2429 33915196 ~ 33915435 (+)
G1976184 NA non-coding downstream 14914 33927681 ~ 33932054 (+)
G1976185 NA non-coding downstream 30360 33943127 ~ 33943900 (+)
G1976201 LOC106611262 non-coding downstream 51892 33964659 ~ 33965088 (+)
G1976217 NA non-coding downstream 63989 33976756 ~ 33977881 (+)
G1976029 LOC106611270 other upstream 119598 33787004 ~ 33788129 (+)
G1974953 NA other upstream 1001752 32904126 ~ 32905975 (+)
G1974049 NA other upstream 1832966 32073992 ~ 32074761 (+)
G1976573 LOC100194703 other downstream 567263 34480030 ~ 34480897 (+)
G1976574 LOC100194703 other downstream 568137 34480904 ~ 34481279 (+)
G1976575 NA other downstream 568752 34481519 ~ 34481921 (+)
G1976680 NA other downstream 789213 34701980 ~ 34703894 (+)

Expression


Co-expression Network