G1976257


Basic Information

Item Value
gene id G1976257
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 33982437 ~ 33988957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2259144
ttgatgacagcttagcattgtcacaaccagcttcatgaggtagtcacctggaatgcttttccaacagacttgaaggagttctcacatactgtatgctgagcacttgttggctgccttcactctgcggtccaactcatcccaaacaatctcaattgggttgatgtcgggtgattgtggccaggtcatctgattcagcactacatcactctccttcttggtcaaatagcccttactttCATGACTCAGGATATgatccagatgcagacacaggaggcagatagtacagttctcagatGATTTATTGTAAACATGgggcaggcaaagggcaggtcgaggacaggcaggGGTTCGTGATCAGGTctgagtcaggcaggtacaggatggcaggcaggctcggggtcagggcaggcagaatagtcagaaccgggaaaactaggaaacaggAGACATAGGGCTGTGAGATATAGGTTTAATTCTGGACACATGAAAAGTTGGATGTATACTGAGGGTACGGGGCAAAggaagacgaacagcagaggggctaaggaTCTTGAAGATGGGGAAGGGCTGATCAAATAGGAGGGACAGTTTGCGGGACAGGTGGTGGGATTAGTGGAGACGAGGCAGCGAAGAGTcgtctccaggtcctgattggctctCTCCGACTGGCCGTTGGACTGGGTATGAAaaccagaggacaggctggccgatgacccaataagggtgcagaacgccttccagaactggCACAAGAACTGGGGACCGCGATCTGAGATCATGTCGACTGGCAGTCCATGGttccggaagacgtgctgcaccatgagctgggccgtctccttagCTGAGGGCAACTTTGGAAGGAGAATAAAATGGAAAACCGGTCCACcaccgtaaggatggtggtgttgccatcagacggcgGGAGGCCCGTGACCAAGGACATATGGGACCAGGTGCAGTAAAGGACAGGAAGTGGTTGAAGGAGGCCAGCCGTAGCTTGCCGCAGAGTCTTGTTCTAGGCACACACACTACAGGCGGCAATGAATGCAGAAACATCAGGaaccatggtgggccaccaaaacCGTTGTCGGTCCTTGGTCCGACGGGAGCCAGGATGACAGGTGAGTCTCAAGGAATGTACCCATTCCAGAACAGGAGCACGGGCAGAGTCCGGGACAAACATCCGGTTAGCTGGGAACACTGTGCCTTGCGGACCAGACTCTCGATTCCCCAGAAAATAGCAGCCGCTAGACAGGAAGCAGAGAGAATGATATTGGGGTCCGAGGGTATAGTAAAAGGGGCTGTACAGACGTGAGAGCGCGTCAGGCTTCACATTCTTGGACCCCGGGCGGTAGGAAAAAGTGAAATGGAAGCTAGTGAATTACAGGACCACGTCAGAGTTGAGACAATTGGCGgtgcggagatattccaggttcatATGGTCCGTCCACGTCAAAAATGGCTGTTCTGCCCCTTCTAACcagttcctccactcctccaacgccGTCTTGACAGCAAGAAATTCTCGATTTCCTACGTCGTAGTTCCTCTCGGCTGGGTTAAGGCGATGGGAAAGGAAGGTGCAGGGATGCAGCTTCTGATCCTTGGCAGAGCGTTGGGAGAGGACAGCCCCCACTCAAACGTCTGAGGTGTTgacctccaccacaaactgacgGGACGGGTCCGGATGGATTAAGATGGCGGCTGTAGGGAATCGCTGTTTGAGGTCAGAGAATGCCCGGTCAGCTGCAGGAGACCATATGAACGGCACCTTGGGAGAGATGAGTGCAGAGAGGGGGGAAGCAAGGGTGCTGTAACCCCAGATGAAATGACGATAGTCATTGGCAAACCCCAGGAAAGGCTGCAGTTGCACTCTGGGCGTGGGTTGAGGCCAAAACACCACCGCTCTCAACTAGTCAGGTTCCATCTGAACACTCCCTGCAGCGATTCCTAGGAACGAGATGGTGGTGCgatggaactcacacttctccGACCTTCATGGACAGCTGCTTCTCCAGGAGACGCTAGAGGACCTGTCGGACATGGAGGATGTGCTCTTGAGCTGACCGGAAATAGATGAGGTCAtacaggggaaaaaaacacaaatcGGTTCAACATGTCTCGGAGCACATAattgaccagggcctggaacactGCGGGAACGTTGGTCAGTCCGGAAGGAATCACCAGGTACTCGTAGTGCCCACTAGCCGTGTTAAAAGCAGTTTTGCATTCCCTTCTCGTATCCAAATCagatcaaatgaaattgtattagCCAACACATGGCAAgcggtgtaaaaggggggggggggggaggcaatgcaaatagtctgggtagccatttgattagatattcaggagtcttatggcttgggggtagaagctgtttagaagcctcttggacctaggctTGGCTTGCGCACTACCCTCTAGTGCCTTGCAGtctgaggccgagcagttgccataccaggcaatgatgcaactaggcaggatgctctcgatggtgcagctgtagaacctttgaggatctgaggatccatgccaaatcttttcagtctcctgaggaggaataggttttgtcgtgccctcttcactactgtcttggtgtgcttggaccatgttggtttgttggtgatgtggacaccaaggaacttgaggctctcaacctgctccactacagccccgtcgatatcaatgggggcgtgcttggtcctctttttcctgtagttcacaatcacctcctttgtcttgatcacgttaaggtagaggttgttgtcctggcaccacacggtcaggtcctgacctcctccctataggctgtcttgtcattgtcggtgatcaggcctaccactgttgtgtcatcggcaaacttaacgaCGGTGTTCGAGTCGTGTCTGGCTgttcagtcatgagtgaacagggagtacaggaggggactgagcacgcacccctggggcccctgtgttgaggatcagcatggcggatgtgttgttacctacccttaccacctgggggcggcacgtcaggaagtctaggaaccagttgcagagggaggtgtttagttccagggtccttagcttagtgatgaacttcgagggcactatggtgttgaacgctgagctatggTCAATGAAtaccattctcacataggtgttgattttgtccaggtgggaaaggacagtgtggagtgcaatagagattgcatcatctgtggatctgttagggtggtatgcaaattggagtctagggtttctgggctaatggtgttgatgtgagccatgaccagcctttcaaagcacttcatggctacagacgtgagtgctacgggtcagtagtcatttaggcaggttacctttgctttcttgggcacagggactatggtggtctgcttaaaacatgttggtatgcATTCCGAAGGACCAACTTGGAGAAGATGGTTGCTCCCTGGAGTGGCTCGAAAGctgaggagatgagtggtagcaGTTAACGTTTTTTAACCGTAATGTCATTGAGACCCCGGTAGTCGATACACGgatgcagggtcttgtccttcttctccacaaagaagaaccctgggGGACCTGGGGAATAAGAGGGACGCATAAACCCAGCAGTGAGAGAGTCCTCAATATACCTTTCCGTTGCGTTGGTCTCCGGACACGACAGGGAATAAAGTCGCCCCGAGGAGGTGTAGTACCCAGTAGAAGGTCGATGGCGCAGTCATAGGGCCGAtgtggaagaggagaggtggcacgggccttgctgaaaacctcccggaggtcctggtattCCGCAGGAATGGTGGAGAGGTTCAGGACTTCTCCCAAGCCACAGGAAGACTTCCCGGGGCAGGCAGTGCCGACTTCAGGCAATGTGCATGGCAAAACGGGCTCAAACCCACGATAGAACCAGTCGATCAGAGGATTGTGCCtctggagccaggagaatcccaaaaCCACGGGTGCATGAGGGGATTCAATGGGCAGGAACTGCACACTTTTACTGTGTAATGTGGGCGACTCTGCCAATAGAGTGCCCTTACAAAGCTCTGATGTCCAAGGGAATCGAGACGGGTTGTGTGGGGATTCCCAGCTCCAACACCAGGGTAGCGTCTAAAAAGCTCTTGTCGGCCCCAAGAGTCAATGAAAACCTGATTAGACTTGGACTGGTCACCCCACAACAGGGAAGAATGGAGAGATGTACGAGAAATGGAGGATGGGAAACACACCGTACAGCTCACCAGCGTACTCGTACCTACTTGATGAGCGTGGGTTTTTAATGGGCAGTTAGCTAAGAAATGTCCCGTAGCTCCACAATATAGACAGCTCTGGGTGTTAAGTCTGCGTATGCGCTCAGCCGGAGACAATTTAGCCCAGCCCAGTTGCATGGGCTCCGAAGGAGCTTCCTACGTTCTCGTAGCCGCCCATCGATCCAGATGGTCAAGGCTATGAGGGAGTCAAGGTCCATGGGCAGCTTCCAGGCTGTGAGCTCATCTCTGATAATCCGTGAAGGAACATGTCGAACAATGCTtccggattccaggcactctcagccaCCAATGTGCGAAAATCCactgcgtagtctgccacactacgggagtcttGACGTAGCTGGAGCAACTTACGCGCAGCTTCTCTCCCGGACAACGGAGAATCAAACACCTTCCGTACTTCCGCCACAAACTCCTCCTCACCCCCGGACATCAGCGTTATGAGGTACGCTAGGTTATGAGGTACGGCAGGTTCCAGATTCTCCAGCGTAGCGCTCCGGAGGATGTGCGTGGGGTTCTCAGgacactggggtaggctgggaaGAAACGCCGCTGTTGGATGGGTTGCTGAGAATCTGTGGGATTACTGGTGTGGCCTGCTGCCGAATAGGGAATATgcagaattgctccagcaatgtatCGAACGCCTGGTCATGGCGTTCTGCCATGGAGTCCCTCCATAAGGTATTGCAGTAACTCCTTGTGTCTTCCAATGGCGGCTCCTTGCTGGGAGACAGCATTGTGGAATTGgtctgagtctgctgggtcagtcatggccagttcgtactatcacgactcaggatatgacccagatgtagacacaggaggcagatagtaCAGTTCCCAGATGATTTATTGTAAACATGgggcaggcaaagggcaggtcgaggacaggcaggGGTTCGTGATCAGGTctgagtcaggcaggtacaggacggcagggagtctcggggtcagggcaggcagaggttcataATTAGGTCaaagtcaggcaggtacaggacggcaggcagactcgggtcagggcaggcagaatagtcagaACCGGGAAAATAGGAAATAGAACATCAGAAAAAGGAAGACGGGAAAGcatgctggtaagacctgacaagacaaactggcaacaaacagagaacacaggtataaatacacaggataATGGGGTGATGGGCGACATCagaaggggggtggagacaagcacaaaggcCGGTGAAACAAATCAGAGTGTgacacttacacagcctggaggtgtgatttgggtcattgtcctgttgaaaaacaaattatagtgccactaagcgcaaacacgatgagatggcgtatcgaatgctgtggtagacacgCTGGTTAAGTGTTTCTTGAAttcaacagtgtcaccagcagagcacccccacaccatcacacctcctccttcatgcttcatggtgggaactacacatgcggacaTCAGCAATTcacatactctgcgtctcacaaagacacggtggttggtaccaaaaatctcaaatttggactcatcagacaaaaggacagatttccatcagtctaatgtccattgctcatgtttcttggcataagcaagtctcttcttattattggtgacctttagtagtggtttctttgcagcaattcaaccacgaaggATGGTTTAAGCAGTCTCCTatgaactgttgatgttgagatgtgtcacttgaactctgtgaagcatttatttgggctgcaatctgaggtgcagttaattctaatgaacatatcctatacagcagaggtaactatgggtcttcctttcctgtggtggtcctcatgagagccagtttcatcatagcgtttgatggtttttgcgactacacttgaagaaacttcaatgttcttgaaattttccagattgactgaccttcatgtcttaaaataatgatggactgtcatttctctttgcttatttgagctgttcttgccataatatggacttggtctttttccaaatagagctatcttcctACCTTGTCATAATACAACTGATTGTCTCTTAAAttcatttttaacaaggcacacctgttaattgttatgcattccaggtgactacctcattaagctggttgagagaaggtcaagagt

Function

NR:

description
Pol polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2259144 True 6385 lncRNA 0.51 2 33982437 33988957

Neighbor

gene id symbol gene type direction distance location
LOC110505813 LOC106611262 coding downstream 1396 33931665 ~ 33981041 (-)
LOC110505812 LOC106611269 coding downstream 94215 33839834 ~ 33888222 (-)
LOC118944291 NA coding downstream 143588 33837398 ~ 33838849 (-)
LOC100136218 LOC106611270 coding downstream 153256 33764320 ~ 33829181 (-)
LOC110505811 LOC106611271 coding downstream 284330 33695613 ~ 33698107 (-)
LOC110505815 LOC106611267 coding upstream 1040 33989997 ~ 34016972 (-)
LOC110504228 NA coding upstream 64594 34053551 ~ 34059575 (-)
eif2s1a if2a coding upstream 80199 34069156 ~ 34072609 (-)
mpp5a LOC106611266 coding upstream 84257 34073214 ~ 34117847 (-)
gphna LOC106611263 coding upstream 129219 34118176 ~ 34235545 (-)
G1976256 NA non-coding downstream 92 33981363 ~ 33982345 (-)
G1976174 NA non-coding downstream 72739 33904827 ~ 33909698 (-)
G1976172 NA non-coding downstream 73989 33903534 ~ 33908448 (-)
G1976137 NA non-coding downstream 133545 33848514 ~ 33848892 (-)
G1975998 NA non-coding downstream 230768 33751436 ~ 33751669 (-)
G1976307 NA non-coding upstream 60969 34049926 ~ 34050169 (-)
G1976331 NA non-coding upstream 74962 34063919 ~ 34064216 (-)
G1976333 NA non-coding upstream 75742 34064699 ~ 34065929 (-)
G1976821 NA non-coding upstream 79323 34068280 ~ 34068460 (-)
G1976857 NA non-coding upstream 155490 34144447 ~ 34145605 (-)
G1975763 NA other downstream 425626 33556430 ~ 33556811 (-)
G1975453 NA other downstream 658112 33319729 ~ 33324325 (-)
G1974000 NA other downstream 1995553 31986443 ~ 31986884 (-)
G1973835 LOC106611243 other downstream 2363938 31614421 ~ 31618499 (-)
G1973793 NA other downstream 2397391 31584540 ~ 31585046 (-)
G1977046 NA other upstream 488663 34477620 ~ 34478809 (-)
G1977226 NA other upstream 886428 34875385 ~ 34876181 (-)
LOC110505829 LOC106611279 other upstream 981195 34970065 ~ 35000444 (-)
G1977346 NA other upstream 1038143 35027100 ~ 35100978 (-)
G1977392 NA other upstream 1064093 35053050 ~ 35056926 (-)

Expression


Co-expression Network