G1977030


Basic Information

Item Value
gene id G1977030
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34454314 ~ 34455801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2260053
tcggtatatatttattttatacaaaaCATGCCTATTAATATACAAacttaagaagaaaaaaaagtactATTAGCTAAGACTAgagctaaatatatatatttagttcTTCCATCTTTCTAAAATACAGTATTCATCCATGCACAGAAAACACTTCAAATTGTTCTCCCCTAGCCTTCACCCCGTTTTGTGCAACCTCATATTCCTCCTTCAAGGCTGCATACAGGTCCGAAACTAACGTCCTTTATGCATGCAAGCCGAGTGTGAGGTCCTTGATGCATGCAAGCCGAGTGTGAGGTCCTTGATGCATGCAAGCCGAGTGTGAGGTCATTGATGCATGCAAGCCGAGTGTGAGGTCCTTGATGCATGCAAGCCGAGTGTGAGCATGCAAGCCGAGTGTGAGGTCCTTGATGCATGCAAGCCGAGTGCGAGGTCCTTGATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTGATGCATTCAAGCCGAGTGCGAGTCAGGAATCGTGAGACAATAAGACCATCACCACCcatacaaaaatgtaaatgtgctTTTTGGAGCAGGGCATCAACATGCACATAGCCCACCTTGGTTGGttgttaaaaataaatacaaaatgtctTGCTCACGAATGGGAATGTAACCTTGTCCCCAGGCTAGAGAGCCGGCTGATAGACAAGACCAATGGGCATGTACCTTTTAGAATGTTTGTGTAGTTACCTCAGAGGAGGCTGTTTCATAAGTGCAAcagtgacatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcct
>TU2260054
ATACCAAATTTCAACATTTAaaatgctatttaaaaaaaatcataaacatctcggtatatatttattttatacaaaaCATGCCTATTAATATACAAacttaagaagaaaaaaaagtactATTAGCTAAGACTAgagctaaatatatatatttagttcTTCCATCTTTCTAAAATACAGTATTCATCCATGCACAGAAAACACTTCAAATTGTTCTCCCCTAGCCTTCACCCCGTTTTGTGCAACCTCATATTCCTCCTTCAAGGCTGCATACAGGTCCGAAACTAACGTCCTTTATGCATGCAAGCCGAGTGTGAGGTCCTTGATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTTATGCATGCAAGCCGAGTGCGAGGTCCTTGATGCATTCAAGCCGAGTGCGAGTCAGGAATCGTGAGACAATAAGACCATCACCACCcatacaaaaatgtaaatgtgctTTTTGGAGCAGGGCATCAACATGCACATAGCCCACCTTGGTTGGttgttaaaaataaatacaaaatgtctTGCTCACGAATGGGAATGTAACCTTGTCCCCAGGCTAGAGAGCCGGCTGATAGACAAGACCAATGGGCATGTACCTTTTAGAATGTTTGTGTAGTTACCTCAGAGGAGGCTGTTTCATAAGTGCAAcagtgacatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcct

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2260053 False 996 lncRNA 0.46 3 34454314 34455751
TU2260054 True 882 lncRNA 0.43 3 34454314 34455801

Neighbor

gene id symbol gene type direction distance location
LOC110504230 LOC106611223 coding downstream 11971 34292468 ~ 34442343 (-)
gphna LOC106611263 coding downstream 218769 34118176 ~ 34235545 (-)
LOC118944181 NA coding downstream 286056 34167460 ~ 34168258 (-)
mpp5a LOC106611266 coding downstream 336467 34073214 ~ 34117847 (-)
eif2s1a if2a coding downstream 381705 34069156 ~ 34072609 (-)
pth2 NA coding upstream 243368 34699169 ~ 34700207 (-)
rin3 LOC106611275 coding upstream 259927 34715728 ~ 34739802 (-)
LOC110505825 LOC106611276 coding upstream 319083 34774884 ~ 34893972 (-)
LOC110504231 LOC106611278 coding upstream 441775 34897576 ~ 34912793 (-)
LOC118944354 LOC106611278 coding upstream 457109 34912910 ~ 34950168 (-)
G1977027 NA non-coding downstream 7979 34445779 ~ 34446335 (-)
G1976932 NA non-coding downstream 165596 34288389 ~ 34288718 (-)
G1976915 NA non-coding downstream 188061 34266050 ~ 34266253 (-)
G1976901 NA non-coding downstream 207526 34240002 ~ 34246788 (-)
G1977046 NA non-coding upstream 22324 34477620 ~ 34478809 (-)
G1977048 NA non-coding upstream 23412 34479213 ~ 34479649 (-)
G1977049 NA non-coding upstream 24238 34480039 ~ 34480322 (-)
G1977050 LOC100194703 non-coding upstream 24850 34480651 ~ 34481106 (-)
G1977090 NA non-coding upstream 98772 34554573 ~ 34563512 (-)
G1975763 NA other downstream 897503 33556430 ~ 33556811 (-)
G1975453 NA other downstream 1129989 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2467430 31986443 ~ 31986884 (-)
G1973835 LOC106611243 other downstream 2835815 31614421 ~ 31618499 (-)
G1973793 NA other downstream 2869268 31584540 ~ 31585046 (-)
G1977226 NA other upstream 419584 34875385 ~ 34876181 (-)
LOC110505829 LOC106611279 other upstream 514351 34970065 ~ 35000444 (-)
G1977346 NA other upstream 571299 35027100 ~ 35100978 (-)
G1977392 NA other upstream 597249 35053050 ~ 35056926 (-)

Expression


Co-expression Network