G1977046


Basic Information

Item Value
gene id G1977046
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34477620 ~ 34478809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2260072
gatttcacatgactgggaatacagatatgcatctgttggtcacaaatactttttaaataaaagacgtggatcagaaaaccagtcattatctggtgtgaccaccatttacatCATGCAGCGTCACACATCTCCTTCGGATAGAGTTGAACAGGCTATTGATTGTTGCCTGTGGAAccttgtcccactcctcttcaatggttgtgcaaagttgatggatattggtgggaactgtacatgtcgatccagagcatcccaaacatgctcaatgggtgacatgtctggtgagtatgcgaCATGAAGCagtgcattatcatactgaaagATGACGTGAAGGCAGAGGATGAATGGCCtctggatctcgtcacggtatctcgtCATGtttaaattgccatcaataaaatgcaattgcgttCCTTGTCCGTAGCTtacgcctgcccataccataaccccactgccactatTGGGCATTCTgatcacaacgttgacatcagcaaatcgcacacccacatgacgccatacacgcggtctgccatctgcccggtacagctgaaaccgggattcatccatgaagagcacacctctccagcgtgccagtgaaggtgagcatttacccactgaagtcagttaggATGCCGAACAGCAGTAAGATCAAGATGaggagcacgcagatgagcttccctgagatggtttctgacagtttgtgcagaaattcttcagttgtacaaaccctgtttcatcagctgtccgggtggctggtctcagacgatcccacaggtgaagaagcagaatatggaggtcctgggctggcgtggttacacctgTCTGCGGTTGTGATGCCGGTCGGACGTAGTGCCAATTTCTCTAAAACgtttgaggcggcttatggtagagaaatgaacgttaaattatctggcaatcactctggtggacattcctgca
>TU2260073
tttcaccaccctgtgaaattCACCATAACTTATattatctgtagcctaataaactgcatgtttTACAGAGTCGTATTGGGAGAACCTAAGAAcatatcatcgcgtgactccaagtttacttctgTATGATGGTTATTACACCGAATGAAAACATAagatgcaacatgcaacaatttaatcaattctacagagttacagttcatttaagaaaatctgtcaattgaaatgaattcattaggccctaatctatggatttcacatgactgggaatacagatatgcatctgttggtcacaaatactttttaaataaaagacgtggatcagaaaaccagtcattatctggtgtgaccaccatttacatCATGCAGCGTCACACATCTCCTTCGGATAGAGTTGAACAGGCTATTGATTGTTGCCTGTGGAAccttgtcccactcctcttcaatggttgtgcaaagttgatggatattggtgggaactgtacatgtcgatccagagcatcccaaacatgctcaatgggtgacatgtctggtgagtatgcgaCATGAAGCagtgcattatcatactgaaagATGACGTGAAGGCAGAGGATGAATGGCCtctggatctcgtcacggtatctcgtCATGtttaaattgccatcaataaaatgcaattgcgttCCTTGTCCGTAGCTtacgcctg

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2260072 False 939 TUCP 0.48 1 34477620 34478558
TU2260073 True 685 lncRNA 0.40 1 34478125 34478809

Neighbor

gene id symbol gene type direction distance location
LOC110504230 LOC106611223 coding downstream 35782 34292468 ~ 34442343 (-)
gphna LOC106611263 coding downstream 242580 34118176 ~ 34235545 (-)
LOC118944181 NA coding downstream 309867 34167460 ~ 34168258 (-)
mpp5a LOC106611266 coding downstream 360278 34073214 ~ 34117847 (-)
eif2s1a if2a coding downstream 405516 34069156 ~ 34072609 (-)
pth2 NA coding upstream 220360 34699169 ~ 34700207 (-)
rin3 LOC106611275 coding upstream 236919 34715728 ~ 34739802 (-)
LOC110505825 LOC106611276 coding upstream 296075 34774884 ~ 34893972 (-)
LOC110504231 LOC106611278 coding upstream 418767 34897576 ~ 34912793 (-)
LOC118944354 LOC106611278 coding upstream 434101 34912910 ~ 34950168 (-)
G1977030 NA non-coding downstream 22324 34454314 ~ 34455801 (-)
G1977027 NA non-coding downstream 31790 34445779 ~ 34446335 (-)
G1976932 NA non-coding downstream 189407 34288389 ~ 34288718 (-)
G1976915 NA non-coding downstream 211872 34266050 ~ 34266253 (-)
G1977048 NA non-coding upstream 404 34479213 ~ 34479649 (-)
G1977049 NA non-coding upstream 1230 34480039 ~ 34480322 (-)
G1977050 LOC100194703 non-coding upstream 1842 34480651 ~ 34481106 (-)
G1977090 NA non-coding upstream 75764 34554573 ~ 34563512 (-)
G1976887 NA non-coding upstream 88105 34566914 ~ 34670890 (-)
G1975763 NA other downstream 921314 33556430 ~ 33556811 (-)
G1975453 NA other downstream 1153800 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2491241 31986443 ~ 31986884 (-)
G1973835 LOC106611243 other downstream 2859626 31614421 ~ 31618499 (-)
G1973793 NA other downstream 2893079 31584540 ~ 31585046 (-)
G1977226 NA other upstream 396576 34875385 ~ 34876181 (-)
LOC110505829 LOC106611279 other upstream 491343 34970065 ~ 35000444 (-)
G1977346 NA other upstream 548291 35027100 ~ 35100978 (-)
G1977392 NA other upstream 574241 35053050 ~ 35056926 (-)
G1979142 NA other upstream 1733137 36211946 ~ 36216230 (-)

Expression


Co-expression Network